Results 21 - 40 of 64 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8989 | 5' | -53.8 | NC_002512.2 | + | 26173 | 0.73 | 0.755032 |
Target: 5'- cGUGUCGCa-----GGCCGGCGGGCGa -3' miRNA: 3'- -CACAGCGcaauagUCGGCCGUUCGUg -5' |
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8989 | 5' | -53.8 | NC_002512.2 | + | 117129 | 0.72 | 0.78328 |
Target: 5'- cGUGUCGCGggA-CGGCCGGCucucCGCc -3' miRNA: 3'- -CACAGCGCaaUaGUCGGCCGuuc-GUG- -5' |
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8989 | 5' | -53.8 | NC_002512.2 | + | 140970 | 0.72 | 0.801448 |
Target: 5'- -gGUCGCGUggugaccgAUCGGaUCGGgGGGCACg -3' miRNA: 3'- caCAGCGCAa-------UAGUC-GGCCgUUCGUG- -5' |
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8989 | 5' | -53.8 | NC_002512.2 | + | 78378 | 0.72 | 0.813804 |
Target: 5'- cGUGUCGCGcgaaccgcgaGGCCGGCuggagaucgaGAGCGCg -3' miRNA: 3'- -CACAGCGCaauag-----UCGGCCG----------UUCGUG- -5' |
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8989 | 5' | -53.8 | NC_002512.2 | + | 10542 | 0.71 | 0.817276 |
Target: 5'- --cUCGCGgacgccgggCAGCCGGCGGGcCACg -3' miRNA: 3'- cacAGCGCaaua-----GUCGGCCGUUC-GUG- -5' |
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8989 | 5' | -53.8 | NC_002512.2 | + | 121365 | 0.71 | 0.859781 |
Target: 5'- -cGUCGgGUcccCGGCCGGuCGGGCGCc -3' miRNA: 3'- caCAGCgCAauaGUCGGCC-GUUCGUG- -5' |
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8989 | 5' | -53.8 | NC_002512.2 | + | 132710 | 0.7 | 0.881834 |
Target: 5'- cGUGUCGacc-GUCAGCacgaaGGCGAGCAg -3' miRNA: 3'- -CACAGCgcaaUAGUCGg----CCGUUCGUg -5' |
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8989 | 5' | -53.8 | NC_002512.2 | + | 78428 | 0.68 | 0.935672 |
Target: 5'- uUG-CGCGUUuUCGGCCGGCGccaucuugAGC-Ca -3' miRNA: 3'- cACaGCGCAAuAGUCGGCCGU--------UCGuG- -5' |
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8989 | 5' | -53.8 | NC_002512.2 | + | 108325 | 0.68 | 0.930639 |
Target: 5'- -cGgcgCGCGgcgggcgGUCGGCgCGGCAuGCGCg -3' miRNA: 3'- caCa--GCGCaa-----UAGUCG-GCCGUuCGUG- -5' |
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8989 | 5' | -53.8 | NC_002512.2 | + | 132109 | 0.69 | 0.925367 |
Target: 5'- -cGUC-CGUc-UCGGCCGGC-AGCGCc -3' miRNA: 3'- caCAGcGCAauAGUCGGCCGuUCGUG- -5' |
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8989 | 5' | -53.8 | NC_002512.2 | + | 138527 | 0.69 | 0.924826 |
Target: 5'- -gGUCGCGUcGUCcagcccgucgagcAGCUGGCAGGaGCg -3' miRNA: 3'- caCAGCGCAaUAG-------------UCGGCCGUUCgUG- -5' |
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8989 | 5' | -53.8 | NC_002512.2 | + | 152416 | 0.69 | 0.908116 |
Target: 5'- cGUG-CGCGggAUCc-CCGGCGAcGCGCg -3' miRNA: 3'- -CACaGCGCaaUAGucGGCCGUU-CGUG- -5' |
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8989 | 5' | -53.8 | NC_002512.2 | + | 125300 | 0.7 | 0.888748 |
Target: 5'- --uUCGUGUUGaagCAGCUGGCGaacAGCGCc -3' miRNA: 3'- cacAGCGCAAUa--GUCGGCCGU---UCGUG- -5' |
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8989 | 5' | -53.8 | NC_002512.2 | + | 43445 | 0.7 | 0.888748 |
Target: 5'- -cGUCGuCGgUGUacaggaggccCAGCCGGCcGAGCACg -3' miRNA: 3'- caCAGC-GCaAUA----------GUCGGCCG-UUCGUG- -5' |
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8989 | 5' | -53.8 | NC_002512.2 | + | 149256 | 0.66 | 0.973338 |
Target: 5'- -cGcCGCGga--CGGCCGGaCGGGUACg -3' miRNA: 3'- caCaGCGCaauaGUCGGCC-GUUCGUG- -5' |
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8989 | 5' | -53.8 | NC_002512.2 | + | 210980 | 0.66 | 0.973338 |
Target: 5'- uGUGUCGCGccugcgUGGCCGcGCA-GUACg -3' miRNA: 3'- -CACAGCGCaaua--GUCGGC-CGUuCGUG- -5' |
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8989 | 5' | -53.8 | NC_002512.2 | + | 223219 | 0.66 | 0.973338 |
Target: 5'- -cGgagCGCGUcc-CGGCCGGCucgguGCACu -3' miRNA: 3'- caCa--GCGCAauaGUCGGCCGuu---CGUG- -5' |
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8989 | 5' | -53.8 | NC_002512.2 | + | 198543 | 0.66 | 0.975931 |
Target: 5'- --cUCGUGgUcgUAGCCGGCcaGGGCGCu -3' miRNA: 3'- cacAGCGCaAuaGUCGGCCG--UUCGUG- -5' |
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8989 | 5' | -53.8 | NC_002512.2 | + | 126482 | 0.66 | 0.975931 |
Target: 5'- -cGUCGCGUcgcccggAUCc-CCGGCGuugGGCGCg -3' miRNA: 3'- caCAGCGCAa------UAGucGGCCGU---UCGUG- -5' |
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8989 | 5' | -53.8 | NC_002512.2 | + | 189171 | 1.09 | 0.006155 |
Target: 5'- cGUGUCGCGUUAUCAGCCGGCAAGCACc -3' miRNA: 3'- -CACAGCGCAAUAGUCGGCCGUUCGUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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