miRNA display CGI


Results 1 - 20 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8989 5' -53.8 NC_002512.2 + 156298 0.66 0.982603
Target:  5'- -cGUCGUGaaGUCGGCCGuGUc-GCACg -3'
miRNA:   3'- caCAGCGCaaUAGUCGGC-CGuuCGUG- -5'
8989 5' -53.8 NC_002512.2 + 200098 0.68 0.940466
Target:  5'- -cGUCGCGggGUC-GCCGG--GGUACu -3'
miRNA:   3'- caCAGCGCaaUAGuCGGCCguUCGUG- -5'
8989 5' -53.8 NC_002512.2 + 130534 0.69 0.908116
Target:  5'- -gGUCGCGggAaCAuGCCGGaCAGGCGg -3'
miRNA:   3'- caCAGCGCaaUaGU-CGGCC-GUUCGUg -5'
8989 5' -53.8 NC_002512.2 + 189171 1.09 0.006155
Target:  5'- cGUGUCGCGUUAUCAGCCGGCAAGCACc -3'
miRNA:   3'- -CACAGCGCAAUAGUCGGCCGUUCGUG- -5'
8989 5' -53.8 NC_002512.2 + 210980 0.66 0.973338
Target:  5'- uGUGUCGCGccugcgUGGCCGcGCA-GUACg -3'
miRNA:   3'- -CACAGCGCaaua--GUCGGC-CGUuCGUG- -5'
8989 5' -53.8 NC_002512.2 + 149256 0.66 0.973338
Target:  5'- -cGcCGCGga--CGGCCGGaCGGGUACg -3'
miRNA:   3'- caCaGCGCaauaGUCGGCC-GUUCGUG- -5'
8989 5' -53.8 NC_002512.2 + 35455 0.67 0.967555
Target:  5'- -gGUCGCagaGUUGUUGGCUGGCGAcguGUAUg -3'
miRNA:   3'- caCAGCG---CAAUAGUCGGCCGUU---CGUG- -5'
8989 5' -53.8 NC_002512.2 + 163832 0.67 0.967555
Target:  5'- -aGUC-UGgg--CAGCuCGGCGAGCACa -3'
miRNA:   3'- caCAGcGCaauaGUCG-GCCGUUCGUG- -5'
8989 5' -53.8 NC_002512.2 + 111777 0.67 0.960936
Target:  5'- -cGUCaGCGaUA-CGGCCGGUccGCGCg -3'
miRNA:   3'- caCAG-CGCaAUaGUCGGCCGuuCGUG- -5'
8989 5' -53.8 NC_002512.2 + 111154 0.68 0.945024
Target:  5'- uUGUUGCuGUUgaacagcacGUC-GCCGGCGAGCGg -3'
miRNA:   3'- cACAGCG-CAA---------UAGuCGGCCGUUCGUg -5'
8989 5' -53.8 NC_002512.2 + 225006 0.67 0.956545
Target:  5'- -cGUCGCcgcuccucCAGCCGGCGccGCACg -3'
miRNA:   3'- caCAGCGcaaua---GUCGGCCGUu-CGUG- -5'
8989 5' -53.8 NC_002512.2 + 174666 0.67 0.960936
Target:  5'- gGUGcCGCacgAUCAGCCGGUAccGGC-Cg -3'
miRNA:   3'- -CACaGCGcaaUAGUCGGCCGU--UCGuG- -5'
8989 5' -53.8 NC_002512.2 + 126482 0.66 0.975931
Target:  5'- -cGUCGCGUcgcccggAUCc-CCGGCGuugGGCGCg -3'
miRNA:   3'- caCAGCGCAa------UAGucGGCCGU---UCGUG- -5'
8989 5' -53.8 NC_002512.2 + 113646 0.68 0.953437
Target:  5'- -aGUCGUaGUUGgcgCGGCCGGCcgcgaggguGCGCg -3'
miRNA:   3'- caCAGCG-CAAUa--GUCGGCCGuu-------CGUG- -5'
8989 5' -53.8 NC_002512.2 + 198543 0.66 0.975931
Target:  5'- --cUCGUGgUcgUAGCCGGCcaGGGCGCu -3'
miRNA:   3'- cacAGCGCaAuaGUCGGCCG--UUCGUG- -5'
8989 5' -53.8 NC_002512.2 + 209138 0.67 0.964353
Target:  5'- -cGUCGUGggAgacgaCGGCGAGCACg -3'
miRNA:   3'- caCAGCGCaaUagucgGCCGUUCGUG- -5'
8989 5' -53.8 NC_002512.2 + 131190 0.68 0.949347
Target:  5'- aGUGgaagagCGCGUaGUCGuGCgCGGCcAGGCGCu -3'
miRNA:   3'- -CACa-----GCGCAaUAGU-CG-GCCG-UUCGUG- -5'
8989 5' -53.8 NC_002512.2 + 111707 0.68 0.935672
Target:  5'- -gGUCGCGgaugacgaCGGagucuCCGGCGGGCACg -3'
miRNA:   3'- caCAGCGCaaua----GUC-----GGCCGUUCGUG- -5'
8989 5' -53.8 NC_002512.2 + 223219 0.66 0.973338
Target:  5'- -cGgagCGCGUcc-CGGCCGGCucgguGCACu -3'
miRNA:   3'- caCa--GCGCAauaGUCGGCCGuu---CGUG- -5'
8989 5' -53.8 NC_002512.2 + 199917 0.66 0.973338
Target:  5'- cUGUCGUccGUUcgCGGCCGGCcgcCGCu -3'
miRNA:   3'- cACAGCG--CAAuaGUCGGCCGuucGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.