miRNA display CGI


Results 21 - 40 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8989 5' -53.8 NC_002512.2 + 35455 0.67 0.967555
Target:  5'- -gGUCGCagaGUUGUUGGCUGGCGAcguGUAUg -3'
miRNA:   3'- caCAGCG---CAAUAGUCGGCCGUU---CGUG- -5'
8989 5' -53.8 NC_002512.2 + 209138 0.67 0.964353
Target:  5'- -cGUCGUGggAgacgaCGGCGAGCACg -3'
miRNA:   3'- caCAGCGCaaUagucgGCCGUUCGUG- -5'
8989 5' -53.8 NC_002512.2 + 123529 0.67 0.964353
Target:  5'- -cGUCGUcugGUacUCcgAGUCGGCGGGCGCg -3'
miRNA:   3'- caCAGCG---CAauAG--UCGGCCGUUCGUG- -5'
8989 5' -53.8 NC_002512.2 + 184462 0.67 0.960936
Target:  5'- -aGUCGCcg---CGGCCGGCGccgccgucgAGCGCc -3'
miRNA:   3'- caCAGCGcaauaGUCGGCCGU---------UCGUG- -5'
8989 5' -53.8 NC_002512.2 + 129281 0.67 0.960936
Target:  5'- cUGUCGUGc-GUCgAGCCG-CGGGCGCg -3'
miRNA:   3'- cACAGCGCaaUAG-UCGGCcGUUCGUG- -5'
8989 5' -53.8 NC_002512.2 + 111777 0.67 0.960936
Target:  5'- -cGUCaGCGaUA-CGGCCGGUccGCGCg -3'
miRNA:   3'- caCAG-CGCaAUaGUCGGCCGuuCGUG- -5'
8989 5' -53.8 NC_002512.2 + 174666 0.67 0.960936
Target:  5'- gGUGcCGCacgAUCAGCCGGUAccGGC-Cg -3'
miRNA:   3'- -CACaGCGcaaUAGUCGGCCGU--UCGuG- -5'
8989 5' -53.8 NC_002512.2 + 84767 0.67 0.957299
Target:  5'- -gGUagGCGUaguagauggccgUGUCGGCCGGCAGcCGCg -3'
miRNA:   3'- caCAg-CGCA------------AUAGUCGGCCGUUcGUG- -5'
8989 5' -53.8 NC_002512.2 + 225006 0.67 0.956545
Target:  5'- -cGUCGCcgcuccucCAGCCGGCGccGCACg -3'
miRNA:   3'- caCAGCGcaaua---GUCGGCCGUu-CGUG- -5'
8989 5' -53.8 NC_002512.2 + 137771 0.68 0.953437
Target:  5'- cGUGUcCGCGgucuggagGUCGGCgcuCGGCGGGcCGCg -3'
miRNA:   3'- -CACA-GCGCaa------UAGUCG---GCCGUUC-GUG- -5'
8989 5' -53.8 NC_002512.2 + 113646 0.68 0.953437
Target:  5'- -aGUCGUaGUUGgcgCGGCCGGCcgcgaggguGCGCg -3'
miRNA:   3'- caCAGCG-CAAUa--GUCGGCCGuu-------CGUG- -5'
8989 5' -53.8 NC_002512.2 + 120300 0.68 0.949347
Target:  5'- -cGUCGgcUUGUgCAGCCGGU-AGCACg -3'
miRNA:   3'- caCAGCgcAAUA-GUCGGCCGuUCGUG- -5'
8989 5' -53.8 NC_002512.2 + 131190 0.68 0.949347
Target:  5'- aGUGgaagagCGCGUaGUCGuGCgCGGCcAGGCGCu -3'
miRNA:   3'- -CACa-----GCGCAaUAGU-CG-GCCG-UUCGUG- -5'
8989 5' -53.8 NC_002512.2 + 89441 0.68 0.945024
Target:  5'- gGUGgCGCGagcugUGUCGGaaGGCGAGCGa -3'
miRNA:   3'- -CACaGCGCa----AUAGUCggCCGUUCGUg -5'
8989 5' -53.8 NC_002512.2 + 111154 0.68 0.945024
Target:  5'- uUGUUGCuGUUgaacagcacGUC-GCCGGCGAGCGg -3'
miRNA:   3'- cACAGCG-CAA---------UAGuCGGCCGUUCGUg -5'
8989 5' -53.8 NC_002512.2 + 200098 0.68 0.940466
Target:  5'- -cGUCGCGggGUC-GCCGG--GGUACu -3'
miRNA:   3'- caCAGCGCaaUAGuCGGCCguUCGUG- -5'
8989 5' -53.8 NC_002512.2 + 111707 0.68 0.935672
Target:  5'- -gGUCGCGgaugacgaCGGagucuCCGGCGGGCACg -3'
miRNA:   3'- caCAGCGCaaua----GUC-----GGCCGUUCGUG- -5'
8989 5' -53.8 NC_002512.2 + 78428 0.68 0.935672
Target:  5'- uUG-CGCGUUuUCGGCCGGCGccaucuugAGC-Ca -3'
miRNA:   3'- cACaGCGCAAuAGUCGGCCGU--------UCGuG- -5'
8989 5' -53.8 NC_002512.2 + 108325 0.68 0.930639
Target:  5'- -cGgcgCGCGgcgggcgGUCGGCgCGGCAuGCGCg -3'
miRNA:   3'- caCa--GCGCaa-----UAGUCG-GCCGUuCGUG- -5'
8989 5' -53.8 NC_002512.2 + 132109 0.69 0.925367
Target:  5'- -cGUC-CGUc-UCGGCCGGC-AGCGCc -3'
miRNA:   3'- caCAGcGCAauAGUCGGCCGuUCGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.