Results 1 - 7 of 7 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
899 | 3' | -52.8 | NC_000899.1 | + | 6446 | 0.66 | 0.751698 |
Target: 5'- aGCCUAcuucgcuuuucuCCAGCagaaCCAAAAGuucagcuGGCUCAc -3' miRNA: 3'- -CGGAU------------GGUCGa---GGUUUUCu------CCGAGUa -5' |
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899 | 3' | -52.8 | NC_000899.1 | + | 28087 | 0.66 | 0.718437 |
Target: 5'- cCCUGgCAGCUCCAGGucGAGcCUCGc -3' miRNA: 3'- cGGAUgGUCGAGGUUUu-CUCcGAGUa -5' |
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899 | 3' | -52.8 | NC_000899.1 | + | 5890 | 0.67 | 0.707142 |
Target: 5'- uGCCUGCUGGUUUCuaugguGAAGGGGC-CGc -3' miRNA: 3'- -CGGAUGGUCGAGGu-----UUUCUCCGaGUa -5' |
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899 | 3' | -52.8 | NC_000899.1 | + | 25309 | 0.67 | 0.695766 |
Target: 5'- uCCU-CCGGCUCCuccuAGAGaGUUCAg -3' miRNA: 3'- cGGAuGGUCGAGGuuu-UCUC-CGAGUa -5' |
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899 | 3' | -52.8 | NC_000899.1 | + | 9033 | 0.67 | 0.661279 |
Target: 5'- uGCCUcCCAuuuGCUCCAggcgAGGGGGGCgccUCGUg -3' miRNA: 3'- -CGGAuGGU---CGAGGU----UUUCUCCG---AGUA- -5' |
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899 | 3' | -52.8 | NC_000899.1 | + | 40944 | 0.68 | 0.603353 |
Target: 5'- uGUCUugaACUAGCuUCCAGAAGAuGGCaUCGUg -3' miRNA: 3'- -CGGA---UGGUCG-AGGUUUUCU-CCG-AGUA- -5' |
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899 | 3' | -52.8 | NC_000899.1 | + | 6134 | 1.08 | 0.001272 |
Target: 5'- cGCCUACCAGCUCCAAAAGAGGCUCAUu -3' miRNA: 3'- -CGGAUGGUCGAGGUUUUCUCCGAGUA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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