miRNA display CGI


Results 1 - 20 of 173 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8991 3' -52.8 NC_002512.2 + 137233 0.66 0.994703
Target:  5'- cGGCCgucccggaUCCGCGcGGGUCccGGcGCCgGCg -3'
miRNA:   3'- -CCGGa-------AGGUGC-UCCAGu-UCuUGGaCG- -5'
8991 3' -52.8 NC_002512.2 + 121153 0.66 0.994703
Target:  5'- uGCC-UCCGCGAG---AAG-GCCUGCa -3'
miRNA:   3'- cCGGaAGGUGCUCcagUUCuUGGACG- -5'
8991 3' -52.8 NC_002512.2 + 114426 0.66 0.994703
Target:  5'- cGGCUc-CCACGcGGUCcgcGGAACgaGCg -3'
miRNA:   3'- -CCGGaaGGUGCuCCAGu--UCUUGgaCG- -5'
8991 3' -52.8 NC_002512.2 + 45318 0.66 0.994703
Target:  5'- uGCCggcCCGCG-GGUCgGAGGGCCguccGCc -3'
miRNA:   3'- cCGGaa-GGUGCuCCAG-UUCUUGGa---CG- -5'
8991 3' -52.8 NC_002512.2 + 187009 0.66 0.994703
Target:  5'- gGGCCUguaCGCGGGcGUggaggaggaggaCGAGGACCggGCc -3'
miRNA:   3'- -CCGGAag-GUGCUC-CA------------GUUCUUGGa-CG- -5'
8991 3' -52.8 NC_002512.2 + 135001 0.66 0.994703
Target:  5'- cGCCUacccguucgUCCugGAGGaUucGGGCCgGCg -3'
miRNA:   3'- cCGGA---------AGGugCUCCaGuuCUUGGaCG- -5'
8991 3' -52.8 NC_002512.2 + 152690 0.66 0.994703
Target:  5'- cGGCCggucucgUCGCGuccccGGUCGGGGugCgGCg -3'
miRNA:   3'- -CCGGaa-----GGUGCu----CCAGUUCUugGaCG- -5'
8991 3' -52.8 NC_002512.2 + 78557 0.66 0.994469
Target:  5'- cGGCCgggCCGCGAGGgcggauggaaaucgaAAGcgcugaauGACUUGCa -3'
miRNA:   3'- -CCGGaa-GGUGCUCCag-------------UUC--------UUGGACG- -5'
8991 3' -52.8 NC_002512.2 + 18052 0.66 0.994228
Target:  5'- cGGCCgagagCC-CGGGGUcCAGGAagucgaaauaggugcGCCgcgGCg -3'
miRNA:   3'- -CCGGaa---GGuGCUCCA-GUUCU---------------UGGa--CG- -5'
8991 3' -52.8 NC_002512.2 + 184684 0.66 0.993893
Target:  5'- cGGCCgUCCGCGccgccggucccGGUCGAG-ACCUcCg -3'
miRNA:   3'- -CCGGaAGGUGCu----------CCAGUUCuUGGAcG- -5'
8991 3' -52.8 NC_002512.2 + 151435 0.66 0.993893
Target:  5'- cGGCCggcgCCAUGuuGGcUCAAGAuggcGCCgGCc -3'
miRNA:   3'- -CCGGaa--GGUGCu-CC-AGUUCU----UGGaCG- -5'
8991 3' -52.8 NC_002512.2 + 206800 0.66 0.993893
Target:  5'- cGCCgaacUCCgggauccggaACGGGGUgAAGAACaUGCa -3'
miRNA:   3'- cCGGa---AGG----------UGCUCCAgUUCUUGgACG- -5'
8991 3' -52.8 NC_002512.2 + 100804 0.66 0.993893
Target:  5'- cGCCcgUCCuCGGGGUCG---ACCUGg -3'
miRNA:   3'- cCGGa-AGGuGCUCCAGUucuUGGACg -5'
8991 3' -52.8 NC_002512.2 + 220978 0.66 0.993893
Target:  5'- aGGCCgcccuggCCAgGAgGGUCGAGuGCCccaacgGCu -3'
miRNA:   3'- -CCGGaa-----GGUgCU-CCAGUUCuUGGa-----CG- -5'
8991 3' -52.8 NC_002512.2 + 85645 0.66 0.993893
Target:  5'- cGCCgcacuUUCCACgGGGGUUcGGAGuacgucgcCCUGCg -3'
miRNA:   3'- cCGG-----AAGGUG-CUCCAGuUCUU--------GGACG- -5'
8991 3' -52.8 NC_002512.2 + 117328 0.66 0.993893
Target:  5'- cGCC-UCUACGucGGcGUCGAGAAcuucuuCCUGCc -3'
miRNA:   3'- cCGGaAGGUGC--UC-CAGUUCUU------GGACG- -5'
8991 3' -52.8 NC_002512.2 + 117707 0.66 0.993893
Target:  5'- uGGCCaugcUCCGCGcgugcGGGcUCGAGcGCCgGCu -3'
miRNA:   3'- -CCGGa---AGGUGC-----UCC-AGUUCuUGGaCG- -5'
8991 3' -52.8 NC_002512.2 + 41844 0.66 0.993893
Target:  5'- aGGCCgagcugaagUCCAUGuugaaGUCGGGGGCCgacaUGCa -3'
miRNA:   3'- -CCGGa--------AGGUGCuc---CAGUUCUUGG----ACG- -5'
8991 3' -52.8 NC_002512.2 + 54744 0.66 0.992985
Target:  5'- aGGCCUUCUGCGuGGacacCAAGAcgugGCggGCg -3'
miRNA:   3'- -CCGGAAGGUGCuCCa---GUUCU----UGgaCG- -5'
8991 3' -52.8 NC_002512.2 + 60791 0.66 0.992985
Target:  5'- cGCC--CCGCGAGGaCGAGGACgCggGCc -3'
miRNA:   3'- cCGGaaGGUGCUCCaGUUCUUG-Ga-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.