miRNA display CGI


Results 1 - 20 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8992 3' -58.2 NC_002512.2 + 188200 1.08 0.003208
Target:  5'- gCAGAUCAUGCCCACCGGGACGGUGCAg -3'
miRNA:   3'- -GUCUAGUACGGGUGGCCCUGCCACGU- -5'
8992 3' -58.2 NC_002512.2 + 158680 0.8 0.218274
Target:  5'- cCGGAUCAUgGCCgGCCGGGACGGggagGUg -3'
miRNA:   3'- -GUCUAGUA-CGGgUGGCCCUGCCa---CGu -5'
8992 3' -58.2 NC_002512.2 + 190256 0.75 0.406251
Target:  5'- --cAUCAcGCCCAUCGGGGUGGUGCAc -3'
miRNA:   3'- gucUAGUaCGGGUGGCCCUGCCACGU- -5'
8992 3' -58.2 NC_002512.2 + 141197 0.75 0.431592
Target:  5'- cCGGAUCAUGCagcagcgcaGCCGGGGCGGguucggGCGg -3'
miRNA:   3'- -GUCUAGUACGgg-------UGGCCCUGCCa-----CGU- -5'
8992 3' -58.2 NC_002512.2 + 219478 0.74 0.475794
Target:  5'- -cGGUCGUGCCC-CUGGGGCGG-GUc -3'
miRNA:   3'- guCUAGUACGGGuGGCCCUGCCaCGu -5'
8992 3' -58.2 NC_002512.2 + 106615 0.73 0.550766
Target:  5'- cCAGGUCuggAUGUCCGCCGGGG-GGUaGCGg -3'
miRNA:   3'- -GUCUAG---UACGGGUGGCCCUgCCA-CGU- -5'
8992 3' -58.2 NC_002512.2 + 223025 0.72 0.57986
Target:  5'- aCGGGUCGUcGCCCAcuccggcgagguCCGGGA-GGUGCc -3'
miRNA:   3'- -GUCUAGUA-CGGGU------------GGCCCUgCCACGu -5'
8992 3' -58.2 NC_002512.2 + 50575 0.72 0.57986
Target:  5'- aGGAUC-UGCCCgccucGCCGcccgcggacuGGACGGUGCGa -3'
miRNA:   3'- gUCUAGuACGGG-----UGGC----------CCUGCCACGU- -5'
8992 3' -58.2 NC_002512.2 + 219542 0.71 0.613199
Target:  5'- -cGG-CGUGCCCACCggacggucuucgccgGGGACGuGUGCGa -3'
miRNA:   3'- guCUaGUACGGGUGG---------------CCCUGC-CACGU- -5'
8992 3' -58.2 NC_002512.2 + 206056 0.7 0.66831
Target:  5'- uGGAUCAgguacagggUGgCCACCuGGGugccGCGGUGCAg -3'
miRNA:   3'- gUCUAGU---------ACgGGUGG-CCC----UGCCACGU- -5'
8992 3' -58.2 NC_002512.2 + 16013 0.7 0.6781
Target:  5'- aUAGGUCGg--CCGCCGGGugGGgaaggGCAg -3'
miRNA:   3'- -GUCUAGUacgGGUGGCCCugCCa----CGU- -5'
8992 3' -58.2 NC_002512.2 + 82029 0.7 0.697565
Target:  5'- cCGGGUCGggGUCgCGCCGGcGGCGGUcGCGg -3'
miRNA:   3'- -GUCUAGUa-CGG-GUGGCC-CUGCCA-CGU- -5'
8992 3' -58.2 NC_002512.2 + 67808 0.69 0.745198
Target:  5'- -cGGUCAccCCCACCGGGACGaaacacgGCAg -3'
miRNA:   3'- guCUAGUacGGGUGGCCCUGCca-----CGU- -5'
8992 3' -58.2 NC_002512.2 + 138237 0.69 0.772742
Target:  5'- gAGGUCAccaCCuuCACCGGGugGGUGUu -3'
miRNA:   3'- gUCUAGUac-GG--GUGGCCCugCCACGu -5'
8992 3' -58.2 NC_002512.2 + 131732 0.69 0.772742
Target:  5'- cCAGA-CGcgGCgaCCGCCGGGGCGG-GCGg -3'
miRNA:   3'- -GUCUaGUa-CG--GGUGGCCCUGCCaCGU- -5'
8992 3' -58.2 NC_002512.2 + 161856 0.68 0.781701
Target:  5'- aCGGcGUCGgcgGUCCucCCGGGuCGGUGCGu -3'
miRNA:   3'- -GUC-UAGUa--CGGGu-GGCCCuGCCACGU- -5'
8992 3' -58.2 NC_002512.2 + 184108 0.68 0.799239
Target:  5'- gCGGGUgCAguucGCCCACgGGGGCGGguucGCc -3'
miRNA:   3'- -GUCUA-GUa---CGGGUGgCCCUGCCa---CGu -5'
8992 3' -58.2 NC_002512.2 + 116372 0.68 0.807802
Target:  5'- aGGGUCAUGCuggcccugcgguCC-CCGGGGCGGgucGCc -3'
miRNA:   3'- gUCUAGUACG------------GGuGGCCCUGCCa--CGu -5'
8992 3' -58.2 NC_002512.2 + 112900 0.68 0.816217
Target:  5'- gCGGccGUCG-GCCCGCCcGGACGGgGCGu -3'
miRNA:   3'- -GUC--UAGUaCGGGUGGcCCUGCCaCGU- -5'
8992 3' -58.2 NC_002512.2 + 119532 0.68 0.816217
Target:  5'- cCAGGUCGUccgagcuguugGCCCGCUuGG-CGGUGUAg -3'
miRNA:   3'- -GUCUAGUA-----------CGGGUGGcCCuGCCACGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.