miRNA display CGI


Results 61 - 80 of 118 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8992 5' -57.4 NC_002512.2 + 126390 0.67 0.892782
Target:  5'- --cGCGCUGCCCGgCGAgCGGUCc--- -3'
miRNA:   3'- guaCGUGGUGGGCgGCU-GCCAGuuca -5'
8992 5' -57.4 NC_002512.2 + 74415 0.67 0.892782
Target:  5'- gGUGCcgACgaACUCGCgguCGACGGUCAGGUc -3'
miRNA:   3'- gUACG--UGg-UGGGCG---GCUGCCAGUUCA- -5'
8992 5' -57.4 NC_002512.2 + 41880 0.67 0.892782
Target:  5'- aCAUGCAaaCGCgCGCCGACaGGUcCGAGc -3'
miRNA:   3'- -GUACGUg-GUGgGCGGCUG-CCA-GUUCa -5'
8992 5' -57.4 NC_002512.2 + 80738 0.67 0.886246
Target:  5'- --gGCACCGgcCCCG-CGGCGGUCccGGGUc -3'
miRNA:   3'- guaCGUGGU--GGGCgGCUGCCAG--UUCA- -5'
8992 5' -57.4 NC_002512.2 + 80463 0.67 0.886246
Target:  5'- --cGCGCCcgccCCCGCCG-CGGUCc--- -3'
miRNA:   3'- guaCGUGGu---GGGCGGCuGCCAGuuca -5'
8992 5' -57.4 NC_002512.2 + 18519 0.67 0.886246
Target:  5'- --cGCAgCauGCCgCGCCgGGCGGUCAGGc -3'
miRNA:   3'- guaCGUgG--UGG-GCGG-CUGCCAGUUCa -5'
8992 5' -57.4 NC_002512.2 + 134149 0.67 0.865397
Target:  5'- --cGCGCguCCCgGCCGGCGGggaCGGGg -3'
miRNA:   3'- guaCGUGguGGG-CGGCUGCCa--GUUCa -5'
8992 5' -57.4 NC_002512.2 + 130704 0.67 0.882223
Target:  5'- --gGCccGCCGCCCGCaucuacgagaucaagUGcCGGUCAAGUa -3'
miRNA:   3'- guaCG--UGGUGGGCG---------------GCuGCCAGUUCA- -5'
8992 5' -57.4 NC_002512.2 + 119220 0.68 0.85805
Target:  5'- --aGCACCaggACCgGCUGcccGCGGUCGAGc -3'
miRNA:   3'- guaCGUGG---UGGgCGGC---UGCCAGUUCa -5'
8992 5' -57.4 NC_002512.2 + 105621 0.68 0.818578
Target:  5'- --gGCACCGgCCGUCGuCGGUCuccGAGa -3'
miRNA:   3'- guaCGUGGUgGGCGGCuGCCAG---UUCa -5'
8992 5' -57.4 NC_002512.2 + 121127 0.68 0.834889
Target:  5'- --cGUACCcgaACCCGUCGACGGcggcCGAGa -3'
miRNA:   3'- guaCGUGG---UGGGCGGCUGCCa---GUUCa -5'
8992 5' -57.4 NC_002512.2 + 105200 0.68 0.83168
Target:  5'- gCGUGCGCCcggaucccgagguCCCGuCUGGCGGUgAGGg -3'
miRNA:   3'- -GUACGUGGu------------GGGC-GGCUGCCAgUUCa -5'
8992 5' -57.4 NC_002512.2 + 87774 0.68 0.85805
Target:  5'- --aGCuCCGgCCGCCGACgGGUC-GGUa -3'
miRNA:   3'- guaCGuGGUgGGCGGCUG-CCAGuUCA- -5'
8992 5' -57.4 NC_002512.2 + 206539 0.68 0.85805
Target:  5'- uCGUGCucGCCGCacucguacaCCGCCGGCGGccCGGGg -3'
miRNA:   3'- -GUACG--UGGUG---------GGCGGCUGCCa-GUUCa -5'
8992 5' -57.4 NC_002512.2 + 136494 0.68 0.834889
Target:  5'- -cUGCAUCACCgGCCucuCGGUCAcGUc -3'
miRNA:   3'- guACGUGGUGGgCGGcu-GCCAGUuCA- -5'
8992 5' -57.4 NC_002512.2 + 80575 0.68 0.834889
Target:  5'- uCcgGCGgCgaGCCCGCgCGGCGGUCGAc- -3'
miRNA:   3'- -GuaCGUgG--UGGGCG-GCUGCCAGUUca -5'
8992 5' -57.4 NC_002512.2 + 44403 0.68 0.850512
Target:  5'- gCGUGCGCCaugACCUG-CGGCGG-CAGGa -3'
miRNA:   3'- -GUACGUGG---UGGGCgGCUGCCaGUUCa -5'
8992 5' -57.4 NC_002512.2 + 2145 0.68 0.850512
Target:  5'- --cGuCGCCuccCCCGUcaCGGCGGUCGAGg -3'
miRNA:   3'- guaC-GUGGu--GGGCG--GCUGCCAGUUCa -5'
8992 5' -57.4 NC_002512.2 + 11663 0.69 0.784123
Target:  5'- aUcgGCGCCgcgGCCCGCCG-CGGccCGAGg -3'
miRNA:   3'- -GuaCGUGG---UGGGCGGCuGCCa-GUUCa -5'
8992 5' -57.4 NC_002512.2 + 142107 0.69 0.784123
Target:  5'- cCcgGUACCgACCCGUCGGCGGcCGGa- -3'
miRNA:   3'- -GuaCGUGG-UGGGCGGCUGCCaGUUca -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.