miRNA display CGI


Results 61 - 80 of 118 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8992 5' -57.4 NC_002512.2 + 115547 0.66 0.932443
Target:  5'- --aGUuaagUCGCCCGCCGcGCGcGUCAAGa -3'
miRNA:   3'- guaCGu---GGUGGGCGGC-UGC-CAGUUCa -5'
8992 5' -57.4 NC_002512.2 + 116963 0.67 0.872549
Target:  5'- --cGCGCCACcgggCCGCCGACGccccGUCcGGg -3'
miRNA:   3'- guaCGUGGUG----GGCGGCUGC----CAGuUCa -5'
8992 5' -57.4 NC_002512.2 + 117116 0.67 0.886246
Target:  5'- aCAgcgGCACgGggcCCCGUCGGCGGcguUCGAGUc -3'
miRNA:   3'- -GUa--CGUGgU---GGGCGGCUGCC---AGUUCA- -5'
8992 5' -57.4 NC_002512.2 + 119220 0.68 0.85805
Target:  5'- --aGCACCaggACCgGCUGcccGCGGUCGAGc -3'
miRNA:   3'- guaCGUGG---UGGgCGGC---UGCCAGUUCa -5'
8992 5' -57.4 NC_002512.2 + 120887 0.67 0.899105
Target:  5'- --cGaCGCCGCCggCGCCGACGaG-CAGGUa -3'
miRNA:   3'- guaC-GUGGUGG--GCGGCUGC-CaGUUCA- -5'
8992 5' -57.4 NC_002512.2 + 121127 0.68 0.834889
Target:  5'- --cGUACCcgaACCCGUCGACGGcggcCGAGa -3'
miRNA:   3'- guaCGUGG---UGGGCGGCUGCCa---GUUCa -5'
8992 5' -57.4 NC_002512.2 + 121959 0.73 0.559522
Target:  5'- -cUGCAgcugacccggguccCCGCCCGCCGGCGGgaCGAGa -3'
miRNA:   3'- guACGU--------------GGUGGGCGGCUGCCa-GUUCa -5'
8992 5' -57.4 NC_002512.2 + 123158 0.66 0.927442
Target:  5'- --gGCGCCGCgaucgCCGCCGA-GGcCGAGg -3'
miRNA:   3'- guaCGUGGUG-----GGCGGCUgCCaGUUCa -5'
8992 5' -57.4 NC_002512.2 + 123882 0.7 0.738255
Target:  5'- --gGCGCCGCCCGUUcGCcGUCAAGUu -3'
miRNA:   3'- guaCGUGGUGGGCGGcUGcCAGUUCA- -5'
8992 5' -57.4 NC_002512.2 + 124722 0.67 0.886246
Target:  5'- gCGUGCACCuguucCCCGCCGAcuCGG-CcuGUu -3'
miRNA:   3'- -GUACGUGGu----GGGCGGCU--GCCaGuuCA- -5'
8992 5' -57.4 NC_002512.2 + 125021 0.67 0.8795
Target:  5'- gUcgGCGCCGCCCGCUGcgcgaGGUCc--- -3'
miRNA:   3'- -GuaCGUGGUGGGCGGCug---CCAGuuca -5'
8992 5' -57.4 NC_002512.2 + 125549 0.69 0.810183
Target:  5'- --aGcCGCCGCCCGaCCGACGGaaggacggUAGGUa -3'
miRNA:   3'- guaC-GUGGUGGGC-GGCUGCCa-------GUUCA- -5'
8992 5' -57.4 NC_002512.2 + 126390 0.67 0.892782
Target:  5'- --cGCGCUGCCCGgCGAgCGGUCc--- -3'
miRNA:   3'- guaCGUGGUGGGCgGCU-GCCAGuuca -5'
8992 5' -57.4 NC_002512.2 + 127914 0.66 0.911102
Target:  5'- aUcgGcCACgaGCCCGCCGGCGGgcccgCGGGc -3'
miRNA:   3'- -GuaC-GUGg-UGGGCGGCUGCCa----GUUCa -5'
8992 5' -57.4 NC_002512.2 + 128121 0.73 0.552743
Target:  5'- --gGCGCCGuCUCGCCGAaGGUCAGGc -3'
miRNA:   3'- guaCGUGGU-GGGCGGCUgCCAGUUCa -5'
8992 5' -57.4 NC_002512.2 + 128873 0.74 0.543103
Target:  5'- gGUGCugCGCCUGCUGAgGGaCGAGa -3'
miRNA:   3'- gUACGugGUGGGCGGCUgCCaGUUCa -5'
8992 5' -57.4 NC_002512.2 + 130704 0.67 0.882223
Target:  5'- --gGCccGCCGCCCGCaucuacgagaucaagUGcCGGUCAAGUa -3'
miRNA:   3'- guaCG--UGGUGGGCG---------------GCuGCCAGUUCA- -5'
8992 5' -57.4 NC_002512.2 + 131117 0.66 0.932443
Target:  5'- --aGCugC-CCC-CCGACGGcCAGGa -3'
miRNA:   3'- guaCGugGuGGGcGGCUGCCaGUUCa -5'
8992 5' -57.4 NC_002512.2 + 132337 0.66 0.916771
Target:  5'- aGUGCACCAgcaCCGCCucGAUGaUCGAGa -3'
miRNA:   3'- gUACGUGGUg--GGCGG--CUGCcAGUUCa -5'
8992 5' -57.4 NC_002512.2 + 132445 0.67 0.892782
Target:  5'- -uUGCGCUcCCCGgCGGCGGgucCGGGg -3'
miRNA:   3'- guACGUGGuGGGCgGCUGCCa--GUUCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.