miRNA display CGI


Results 81 - 100 of 118 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8992 5' -57.4 NC_002512.2 + 134149 0.67 0.865397
Target:  5'- --cGCGCguCCCgGCCGGCGGggaCGGGg -3'
miRNA:   3'- guaCGUGguGGG-CGGCUGCCa--GUUCa -5'
8992 5' -57.4 NC_002512.2 + 134591 0.66 0.905213
Target:  5'- uUcgGCGCCucgUCCGCCGACGGg----- -3'
miRNA:   3'- -GuaCGUGGu--GGGCGGCUGCCaguuca -5'
8992 5' -57.4 NC_002512.2 + 136494 0.68 0.834889
Target:  5'- -cUGCAUCACCgGCCucuCGGUCAcGUc -3'
miRNA:   3'- guACGUGGUGGgCGGcu-GCCAGUuCA- -5'
8992 5' -57.4 NC_002512.2 + 138000 0.73 0.551777
Target:  5'- cCGUGCGCCGCgCCGCCGcccgcgccggacgGCGGccUCGGGg -3'
miRNA:   3'- -GUACGUGGUG-GGCGGC-------------UGCC--AGUUCa -5'
8992 5' -57.4 NC_002512.2 + 139268 0.67 0.865397
Target:  5'- --cGCGCCGCCCGgCGcGCGGgggCGAa- -3'
miRNA:   3'- guaCGUGGUGGGCgGC-UGCCa--GUUca -5'
8992 5' -57.4 NC_002512.2 + 140559 0.66 0.916771
Target:  5'- gGUGCACgaGCUCuCCGACcuGGUCGAGa -3'
miRNA:   3'- gUACGUGg-UGGGcGGCUG--CCAGUUCa -5'
8992 5' -57.4 NC_002512.2 + 142107 0.69 0.784123
Target:  5'- cCcgGUACCgACCCGUCGGCGGcCGGa- -3'
miRNA:   3'- -GuaCGUGG-UGGGCGGCUGCCaGUUca -5'
8992 5' -57.4 NC_002512.2 + 145352 0.66 0.927442
Target:  5'- --cGCGCCGCCCGaCGcCGGcuaCGAGg -3'
miRNA:   3'- guaCGUGGUGGGCgGCuGCCa--GUUCa -5'
8992 5' -57.4 NC_002512.2 + 146134 0.67 0.872549
Target:  5'- -cUGCACCugCCGCCGgaagaucggcauGCGGaUCGu-- -3'
miRNA:   3'- guACGUGGugGGCGGC------------UGCC-AGUuca -5'
8992 5' -57.4 NC_002512.2 + 146930 0.67 0.899105
Target:  5'- cCGUGCGCCgcgACCUGCUGGCcGUgAAGc -3'
miRNA:   3'- -GUACGUGG---UGGGCGGCUGcCAgUUCa -5'
8992 5' -57.4 NC_002512.2 + 149245 0.67 0.886246
Target:  5'- cCcgGCGCCGCcgCCGCgGACGGccggaCGGGUa -3'
miRNA:   3'- -GuaCGUGGUG--GGCGgCUGCCa----GUUCA- -5'
8992 5' -57.4 NC_002512.2 + 162011 0.74 0.505151
Target:  5'- gAUGCggACCGCCUgGCCGACGG-CGAGg -3'
miRNA:   3'- gUACG--UGGUGGG-CGGCUGCCaGUUCa -5'
8992 5' -57.4 NC_002512.2 + 162220 0.67 0.872549
Target:  5'- --gGCACCACU---CGACGGUCGAGc -3'
miRNA:   3'- guaCGUGGUGGgcgGCUGCCAGUUCa -5'
8992 5' -57.4 NC_002512.2 + 172039 0.72 0.6312
Target:  5'- gCAUGCGCCccACCCGCCG--GGUCAu-- -3'
miRNA:   3'- -GUACGUGG--UGGGCGGCugCCAGUuca -5'
8992 5' -57.4 NC_002512.2 + 179296 0.67 0.892782
Target:  5'- --cGCACCGuccagUCCGCgGGCGG-CGAGg -3'
miRNA:   3'- guaCGUGGU-----GGGCGgCUGCCaGUUCa -5'
8992 5' -57.4 NC_002512.2 + 183921 0.66 0.911102
Target:  5'- cCAUGaACCACaCCGCCG-CGGaUCAGa- -3'
miRNA:   3'- -GUACgUGGUG-GGCGGCuGCC-AGUUca -5'
8992 5' -57.4 NC_002512.2 + 184095 0.66 0.932443
Target:  5'- --aGCACgGCCC-CCGGCGGgugCAGu- -3'
miRNA:   3'- guaCGUGgUGGGcGGCUGCCa--GUUca -5'
8992 5' -57.4 NC_002512.2 + 184368 0.66 0.932443
Target:  5'- --cGcCGCCGCCCGCCG-CGGg----- -3'
miRNA:   3'- guaC-GUGGUGGGCGGCuGCCaguuca -5'
8992 5' -57.4 NC_002512.2 + 184624 0.69 0.801637
Target:  5'- --cGCgaGCC-CCCGCCGGCGGccgacggCGAGUc -3'
miRNA:   3'- guaCG--UGGuGGGCGGCUGCCa------GUUCA- -5'
8992 5' -57.4 NC_002512.2 + 184692 0.69 0.784123
Target:  5'- --cGCGCCGCCgGUCc-CGGUCGAGa -3'
miRNA:   3'- guaCGUGGUGGgCGGcuGCCAGUUCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.