miRNA display CGI


Results 101 - 118 of 118 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8992 5' -57.4 NC_002512.2 + 184095 0.66 0.932443
Target:  5'- --aGCACgGCCC-CCGGCGGgugCAGu- -3'
miRNA:   3'- guaCGUGgUGGGcGGCUGCCa--GUUca -5'
8992 5' -57.4 NC_002512.2 + 219210 0.66 0.932443
Target:  5'- -cUGCACUGCCgGgCCGGCcucggcgaGGUCGGGa -3'
miRNA:   3'- guACGUGGUGGgC-GGCUG--------CCAGUUCa -5'
8992 5' -57.4 NC_002512.2 + 146930 0.67 0.899105
Target:  5'- cCGUGCGCCgcgACCUGCUGGCcGUgAAGc -3'
miRNA:   3'- -GUACGUGG---UGGGCGGCUGcCAgUUCa -5'
8992 5' -57.4 NC_002512.2 + 120887 0.67 0.899105
Target:  5'- --cGaCGCCGCCggCGCCGACGaG-CAGGUa -3'
miRNA:   3'- guaC-GUGGUGG--GCGGCUGC-CaGUUCA- -5'
8992 5' -57.4 NC_002512.2 + 223300 0.67 0.8795
Target:  5'- aCAUgGUGCCGCCgGUCGAcaccgugaaCGGUCGGGa -3'
miRNA:   3'- -GUA-CGUGGUGGgCGGCU---------GCCAGUUCa -5'
8992 5' -57.4 NC_002512.2 + 101000 0.67 0.8795
Target:  5'- uGUGUcgcagacaGCUGCCCG-UGGCGGUCAGGa -3'
miRNA:   3'- gUACG--------UGGUGGGCgGCUGCCAGUUCa -5'
8992 5' -57.4 NC_002512.2 + 103081 0.67 0.8795
Target:  5'- --cGCACUGCCggucgcaGCCGAagcaGGUCGGGUu -3'
miRNA:   3'- guaCGUGGUGGg------CGGCUg---CCAGUUCA- -5'
8992 5' -57.4 NC_002512.2 + 125021 0.67 0.8795
Target:  5'- gUcgGCGCCGCCCGCUGcgcgaGGUCc--- -3'
miRNA:   3'- -GuaCGUGGUGGGCGGCug---CCAGuuca -5'
8992 5' -57.4 NC_002512.2 + 97779 0.67 0.886246
Target:  5'- --gGCGCUGCCgGCCGAgaCGGaCGAGa -3'
miRNA:   3'- guaCGUGGUGGgCGGCU--GCCaGUUCa -5'
8992 5' -57.4 NC_002512.2 + 124722 0.67 0.886246
Target:  5'- gCGUGCACCuguucCCCGCCGAcuCGG-CcuGUu -3'
miRNA:   3'- -GUACGUGGu----GGGCGGCU--GCCaGuuCA- -5'
8992 5' -57.4 NC_002512.2 + 117116 0.67 0.886246
Target:  5'- aCAgcgGCACgGggcCCCGUCGGCGGcguUCGAGUc -3'
miRNA:   3'- -GUa--CGUGgU---GGGCGGCUGCC---AGUUCA- -5'
8992 5' -57.4 NC_002512.2 + 149245 0.67 0.886246
Target:  5'- cCcgGCGCCGCcgCCGCgGACGGccggaCGGGUa -3'
miRNA:   3'- -GuaCGUGGUG--GGCGgCUGCCa----GUUCA- -5'
8992 5' -57.4 NC_002512.2 + 33206 0.67 0.892782
Target:  5'- gGUGcCGCUcguCCCGCCGGCaGUCAGa- -3'
miRNA:   3'- gUAC-GUGGu--GGGCGGCUGcCAGUUca -5'
8992 5' -57.4 NC_002512.2 + 77075 0.67 0.892782
Target:  5'- -cUGCucGCCGCCCGCCGucgccGCGGaccucCGAGa -3'
miRNA:   3'- guACG--UGGUGGGCGGC-----UGCCa----GUUCa -5'
8992 5' -57.4 NC_002512.2 + 132445 0.67 0.892782
Target:  5'- -uUGCGCUcCCCGgCGGCGGgucCGGGg -3'
miRNA:   3'- guACGUGGuGGGCgGCUGCCa--GUUCa -5'
8992 5' -57.4 NC_002512.2 + 179296 0.67 0.892782
Target:  5'- --cGCACCGuccagUCCGCgGGCGG-CGAGg -3'
miRNA:   3'- guaCGUGGU-----GGGCGgCUGCCaGUUCa -5'
8992 5' -57.4 NC_002512.2 + 92155 0.67 0.899105
Target:  5'- gCGUGCaggaccugccgACCAaCCCGaCGGCGGUgGAGg -3'
miRNA:   3'- -GUACG-----------UGGU-GGGCgGCUGCCAgUUCa -5'
8992 5' -57.4 NC_002512.2 + 184368 0.66 0.932443
Target:  5'- --cGcCGCCGCCCGCCG-CGGg----- -3'
miRNA:   3'- guaC-GUGGUGGGCGGCuGCCaguuca -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.