miRNA display CGI


Results 101 - 118 of 118 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8992 5' -57.4 NC_002512.2 + 123158 0.66 0.927442
Target:  5'- --gGCGCCGCgaucgCCGCCGA-GGcCGAGg -3'
miRNA:   3'- guaCGUGGUG-----GGCGGCUgCCaGUUCa -5'
8992 5' -57.4 NC_002512.2 + 115547 0.66 0.932443
Target:  5'- --aGUuaagUCGCCCGCCGcGCGcGUCAAGa -3'
miRNA:   3'- guaCGu---GGUGGGCGGC-UGC-CAGUUCa -5'
8992 5' -57.4 NC_002512.2 + 92066 0.66 0.911102
Target:  5'- aCGUGCugCugUCGCaCGACGcaguucucGUCGAGc -3'
miRNA:   3'- -GUACGugGugGGCG-GCUGC--------CAGUUCa -5'
8992 5' -57.4 NC_002512.2 + 60452 0.66 0.916771
Target:  5'- uGUGCGCCGCcaacauCCGCgCGACGGaCAc-- -3'
miRNA:   3'- gUACGUGGUG------GGCG-GCUGCCaGUuca -5'
8992 5' -57.4 NC_002512.2 + 54825 0.66 0.911102
Target:  5'- uGUGCACgucgCACCCGCgGAacCGGcCGAGc -3'
miRNA:   3'- gUACGUG----GUGGGCGgCU--GCCaGUUCa -5'
8992 5' -57.4 NC_002512.2 + 130704 0.67 0.882223
Target:  5'- --gGCccGCCGCCCGCaucuacgagaucaagUGcCGGUCAAGUa -3'
miRNA:   3'- guaCG--UGGUGGGCG---------------GCuGCCAGUUCA- -5'
8992 5' -57.4 NC_002512.2 + 97356 0.67 0.88558
Target:  5'- --gGCGCCGCCCGCggagcggggaccgCGGCGGcCGGa- -3'
miRNA:   3'- guaCGUGGUGGGCG-------------GCUGCCaGUUca -5'
8992 5' -57.4 NC_002512.2 + 18519 0.67 0.886246
Target:  5'- --cGCAgCauGCCgCGCCgGGCGGUCAGGc -3'
miRNA:   3'- guaCGUgG--UGG-GCGG-CUGCCAGUUCa -5'
8992 5' -57.4 NC_002512.2 + 80463 0.67 0.886246
Target:  5'- --cGCGCCcgccCCCGCCG-CGGUCc--- -3'
miRNA:   3'- guaCGUGGu---GGGCGGCuGCCAGuuca -5'
8992 5' -57.4 NC_002512.2 + 80738 0.67 0.886246
Target:  5'- --gGCACCGgcCCCG-CGGCGGUCccGGGUc -3'
miRNA:   3'- guaCGUGGU--GGGCgGCUGCCAG--UUCA- -5'
8992 5' -57.4 NC_002512.2 + 41880 0.67 0.892782
Target:  5'- aCAUGCAaaCGCgCGCCGACaGGUcCGAGc -3'
miRNA:   3'- -GUACGUg-GUGgGCGGCUG-CCA-GUUCa -5'
8992 5' -57.4 NC_002512.2 + 74415 0.67 0.892782
Target:  5'- gGUGCcgACgaACUCGCgguCGACGGUCAGGUc -3'
miRNA:   3'- gUACG--UGg-UGGGCG---GCUGCCAGUUCA- -5'
8992 5' -57.4 NC_002512.2 + 126390 0.67 0.892782
Target:  5'- --cGCGCUGCCCGgCGAgCGGUCc--- -3'
miRNA:   3'- guaCGUGGUGGGCgGCU-GCCAGuuca -5'
8992 5' -57.4 NC_002512.2 + 27742 0.67 0.898483
Target:  5'- ----gACCACCCGCCccgcggcGGCGGcCGAGa -3'
miRNA:   3'- guacgUGGUGGGCGG-------CUGCCaGUUCa -5'
8992 5' -57.4 NC_002512.2 + 12278 0.66 0.905213
Target:  5'- --gGCGCCGCCCgagucGCCGACGaccccCGAGg -3'
miRNA:   3'- guaCGUGGUGGG-----CGGCUGCca---GUUCa -5'
8992 5' -57.4 NC_002512.2 + 86346 0.66 0.905213
Target:  5'- --cGCGCgG-CCGCCGACGGcgaCGAGg -3'
miRNA:   3'- guaCGUGgUgGGCGGCUGCCa--GUUCa -5'
8992 5' -57.4 NC_002512.2 + 96068 0.66 0.905213
Target:  5'- --gGUACgACUCgGCCGucuCGGUCAGGUc -3'
miRNA:   3'- guaCGUGgUGGG-CGGCu--GCCAGUUCA- -5'
8992 5' -57.4 NC_002512.2 + 4650 0.66 0.932443
Target:  5'- --aGCACgGgagcggaggcCCCGCCGGCGcGUCGAa- -3'
miRNA:   3'- guaCGUGgU----------GGGCGGCUGC-CAGUUca -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.