miRNA display CGI


Results 1 - 20 of 249 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8993 3' -59.8 NC_002512.2 + 142052 0.66 0.872681
Target:  5'- uCGGCGcauuucgcCUCGGccccuccgaccgccgCGCCCGCcUCGACg -3'
miRNA:   3'- uGCCGUu-------GAGCCa--------------GCGGGCGcAGCUG- -5'
8993 3' -59.8 NC_002512.2 + 5473 0.66 0.872681
Target:  5'- -gGGCAgaACUCGGggaccucguggcgcgCGUCCGCGcCGGg -3'
miRNA:   3'- ugCCGU--UGAGCCa--------------GCGGGCGCaGCUg -5'
8993 3' -59.8 NC_002512.2 + 15627 0.66 0.871992
Target:  5'- -aGGCGACagCGGaacuccUCGgCCGCGggCGGCg -3'
miRNA:   3'- ugCCGUUGa-GCC------AGCgGGCGCa-GCUG- -5'
8993 3' -59.8 NC_002512.2 + 3254 0.66 0.871992
Target:  5'- gACGGUccgcgGGCUCGGUccCGUcgCUGCGUCGcCg -3'
miRNA:   3'- -UGCCG-----UUGAGCCA--GCG--GGCGCAGCuG- -5'
8993 3' -59.8 NC_002512.2 + 3706 0.66 0.871992
Target:  5'- -aGGuCGACcCGGUCGCuccCCGgGUCGGa -3'
miRNA:   3'- ugCC-GUUGaGCCAGCG---GGCgCAGCUg -5'
8993 3' -59.8 NC_002512.2 + 24923 0.66 0.871992
Target:  5'- cGCGGCG--UCGGgcUCgGCCCGCaG-CGACg -3'
miRNA:   3'- -UGCCGUugAGCC--AG-CGGGCG-CaGCUG- -5'
8993 3' -59.8 NC_002512.2 + 27595 0.66 0.871992
Target:  5'- cGCGGCGGCaCGG-CGCCCcggucccacagcGCGgagaGACg -3'
miRNA:   3'- -UGCCGUUGaGCCaGCGGG------------CGCag--CUG- -5'
8993 3' -59.8 NC_002512.2 + 229465 0.66 0.871992
Target:  5'- uGCGGCG--UCGGUCGCgggCGCGagGAg -3'
miRNA:   3'- -UGCCGUugAGCCAGCGg--GCGCagCUg -5'
8993 3' -59.8 NC_002512.2 + 61 0.66 0.871992
Target:  5'- uGCGGCG--UCGGUCGCgggCGCGagGAg -3'
miRNA:   3'- -UGCCGUugAGCCAGCGg--GCGCagCUg -5'
8993 3' -59.8 NC_002512.2 + 164441 0.66 0.871991
Target:  5'- cCGGgAagccGCUCGG-CGCCCucgGCGggggCGACg -3'
miRNA:   3'- uGCCgU----UGAGCCaGCGGG---CGCa---GCUG- -5'
8993 3' -59.8 NC_002512.2 + 225333 0.66 0.871991
Target:  5'- cGCcGCAGCcgUCGGUCGCgCCGCcucaccGUCGcCg -3'
miRNA:   3'- -UGcCGUUG--AGCCAGCG-GGCG------CAGCuG- -5'
8993 3' -59.8 NC_002512.2 + 111184 0.66 0.871991
Target:  5'- aGCGGCAGg-CGGgggaaGCCCacgGCGcCGACg -3'
miRNA:   3'- -UGCCGUUgaGCCag---CGGG---CGCaGCUG- -5'
8993 3' -59.8 NC_002512.2 + 226398 0.66 0.871991
Target:  5'- gACGGC-GC-CGGgacccgucgCGUCCGCGUCuccgGACg -3'
miRNA:   3'- -UGCCGuUGaGCCa--------GCGGGCGCAG----CUG- -5'
8993 3' -59.8 NC_002512.2 + 119714 0.66 0.871991
Target:  5'- aGCGGcCGGC-CGGccgugCGCCCGCa-CGACc -3'
miRNA:   3'- -UGCC-GUUGaGCCa----GCGGGCGcaGCUG- -5'
8993 3' -59.8 NC_002512.2 + 215315 0.66 0.869912
Target:  5'- uGCGGCGACUaCGGcaccggcuUCcucgaccggaucguGCCCGgcucCGUCGACu -3'
miRNA:   3'- -UGCCGUUGA-GCC--------AG--------------CGGGC----GCAGCUG- -5'
8993 3' -59.8 NC_002512.2 + 216997 0.66 0.864994
Target:  5'- uGCGcccGCcuCUCGuUCuCCCGCGUCGGCu -3'
miRNA:   3'- -UGC---CGuuGAGCcAGcGGGCGCAGCUG- -5'
8993 3' -59.8 NC_002512.2 + 24276 0.66 0.864994
Target:  5'- gACGGCGGCgaCGGcauCCCGCGggacagCGGCg -3'
miRNA:   3'- -UGCCGUUGa-GCCagcGGGCGCa-----GCUG- -5'
8993 3' -59.8 NC_002512.2 + 139255 0.66 0.864994
Target:  5'- cGCGGCGcCg-GGUCGCgCCGCc-CGGCg -3'
miRNA:   3'- -UGCCGUuGagCCAGCG-GGCGcaGCUG- -5'
8993 3' -59.8 NC_002512.2 + 224254 0.66 0.864994
Target:  5'- -aGGCGGgUCGG-CGCCCGaCGcccgCGAg -3'
miRNA:   3'- ugCCGUUgAGCCaGCGGGC-GCa---GCUg -5'
8993 3' -59.8 NC_002512.2 + 127264 0.66 0.864994
Target:  5'- aACGGCGACggCGuUCcCCCggGCGUUGGCg -3'
miRNA:   3'- -UGCCGUUGa-GCcAGcGGG--CGCAGCUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.