Results 21 - 40 of 52 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8993 | 5' | -53.7 | NC_002512.2 | + | 16246 | 0.66 | 0.990177 |
Target: 5'- uCGUCGUCGCCGucgcccgcGGCggccaagaGUCAGGgaccGGa -3' miRNA: 3'- uGCAGCAGCGGC--------UCGag------UAGUUCa---CC- -5' |
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8993 | 5' | -53.7 | NC_002512.2 | + | 67767 | 0.66 | 0.990177 |
Target: 5'- -gGUCGUcuccggCGCCGGGgUCGUC-GGUGa -3' miRNA: 3'- ugCAGCA------GCGGCUCgAGUAGuUCACc -5' |
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8993 | 5' | -53.7 | NC_002512.2 | + | 17310 | 0.66 | 0.990177 |
Target: 5'- cGCGUCGUCGCCGccGUcgUCGUCGu---- -3' miRNA: 3'- -UGCAGCAGCGGCu-CG--AGUAGUucacc -5' |
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8993 | 5' | -53.7 | NC_002512.2 | + | 129362 | 0.71 | 0.877447 |
Target: 5'- aGCGUCGUCGCCuucuGuCUCGUgCGGGUGc -3' miRNA: 3'- -UGCAGCAGCGGcu--C-GAGUA-GUUCACc -5' |
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8993 | 5' | -53.7 | NC_002512.2 | + | 72878 | 0.66 | 0.988879 |
Target: 5'- cCGUUGUCGCgGGGCUCGggcccgAAGcGGc -3' miRNA: 3'- uGCAGCAGCGgCUCGAGUag----UUCaCC- -5' |
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8993 | 5' | -53.7 | NC_002512.2 | + | 90172 | 0.66 | 0.985884 |
Target: 5'- uCGUCGUgGCgGGGUUUcgCGAGaGGa -3' miRNA: 3'- uGCAGCAgCGgCUCGAGuaGUUCaCC- -5' |
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8993 | 5' | -53.7 | NC_002512.2 | + | 67644 | 0.66 | 0.985884 |
Target: 5'- -gGUCGUCcacggGCCcccggacgcGGGCUCgaccGUCGAGUGGu -3' miRNA: 3'- ugCAGCAG-----CGG---------CUCGAG----UAGUUCACC- -5' |
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8993 | 5' | -53.7 | NC_002512.2 | + | 134787 | 0.71 | 0.877447 |
Target: 5'- cCGcCGUCGCCGAGCUCG--AGGUc- -3' miRNA: 3'- uGCaGCAGCGGCUCGAGUagUUCAcc -5' |
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8993 | 5' | -53.7 | NC_002512.2 | + | 74383 | 0.7 | 0.909763 |
Target: 5'- cCGUCGUCGCagcAGCUCAUgGGGguccGGa -3' miRNA: 3'- uGCAGCAGCGgc-UCGAGUAgUUCa---CC- -5' |
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8993 | 5' | -53.7 | NC_002512.2 | + | 49424 | 0.69 | 0.953724 |
Target: 5'- gACG-CGaCGCCGAGC-CGUCGAGa-- -3' miRNA: 3'- -UGCaGCaGCGGCUCGaGUAGUUCacc -5' |
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8993 | 5' | -53.7 | NC_002512.2 | + | 137341 | 0.69 | 0.953724 |
Target: 5'- gACGUCGUCGCCGcGGCcgCcgCGGccGGg -3' miRNA: 3'- -UGCAGCAGCGGC-UCGa-GuaGUUcaCC- -5' |
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8993 | 5' | -53.7 | NC_002512.2 | + | 89797 | 0.68 | 0.957487 |
Target: 5'- aGCGUCGUCGUCucGUUCuUCGuccgguacugauAGUGGg -3' miRNA: 3'- -UGCAGCAGCGGcuCGAGuAGU------------UCACC- -5' |
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8993 | 5' | -53.7 | NC_002512.2 | + | 44796 | 0.68 | 0.959993 |
Target: 5'- aACGcCGUCuugacguagaagcgGCCGAGCUCccgGUCGAGgcccGGg -3' miRNA: 3'- -UGCaGCAG--------------CGGCUCGAG---UAGUUCa---CC- -5' |
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8993 | 5' | -53.7 | NC_002512.2 | + | 128181 | 0.68 | 0.961035 |
Target: 5'- gACGagGUCGCCGAGCgggCcgCcGGcGGg -3' miRNA: 3'- -UGCagCAGCGGCUCGa--GuaGuUCaCC- -5' |
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8993 | 5' | -53.7 | NC_002512.2 | + | 5635 | 0.68 | 0.961035 |
Target: 5'- gGCGUCGggCGCCGAcccgccucccccGCUCAUUAAagaucUGGa -3' miRNA: 3'- -UGCAGCa-GCGGCU------------CGAGUAGUUc----ACC- -5' |
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8993 | 5' | -53.7 | NC_002512.2 | + | 83135 | 0.67 | 0.975724 |
Target: 5'- uCGUcccCGUCGUCGAGgUCGUCGGGcccGGc -3' miRNA: 3'- uGCA---GCAGCGGCUCgAGUAGUUCa--CC- -5' |
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8993 | 5' | -53.7 | NC_002512.2 | + | 78982 | 0.67 | 0.981719 |
Target: 5'- aGCGUCGUCcgcgGCCGAgagaggugugGCUucggggugucagucCGUUGAGUGGg -3' miRNA: 3'- -UGCAGCAG----CGGCU----------CGA--------------GUAGUUCACC- -5' |
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8993 | 5' | -53.7 | NC_002512.2 | + | 122504 | 0.67 | 0.982309 |
Target: 5'- aGCGUCGUCGgacagcuuuUCGugcAGCUCGUCAucgGGg -3' miRNA: 3'- -UGCAGCAGC---------GGC---UCGAGUAGUucaCC- -5' |
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8993 | 5' | -53.7 | NC_002512.2 | + | 166772 | 0.67 | 0.984173 |
Target: 5'- uCGUCGggguggguuaUCGCCG-GCgUCAUCGaaaucaagGGUGGg -3' miRNA: 3'- uGCAGC----------AGCGGCuCG-AGUAGU--------UCACC- -5' |
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8993 | 5' | -53.7 | NC_002512.2 | + | 84322 | 0.67 | 0.984173 |
Target: 5'- cGCGUCGcgCGCCGcAGCgUCGccgcguccUCGAGcGGg -3' miRNA: 3'- -UGCAGCa-GCGGC-UCG-AGU--------AGUUCaCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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