Results 21 - 40 of 52 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8993 | 5' | -53.7 | NC_002512.2 | + | 194239 | 0.67 | 0.983994 |
Target: 5'- gUGUCGUCGUCGAGCaugaugaUAUUcgcggccgccgagGAGUGGa -3' miRNA: 3'- uGCAGCAGCGGCUCGa------GUAG-------------UUCACC- -5' |
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8993 | 5' | -53.7 | NC_002512.2 | + | 122504 | 0.67 | 0.982309 |
Target: 5'- aGCGUCGUCGgacagcuuuUCGugcAGCUCGUCAucgGGg -3' miRNA: 3'- -UGCAGCAGC---------GGC---UCGAGUAGUucaCC- -5' |
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8993 | 5' | -53.7 | NC_002512.2 | + | 78982 | 0.67 | 0.981719 |
Target: 5'- aGCGUCGUCcgcgGCCGAgagaggugugGCUucggggugucagucCGUUGAGUGGg -3' miRNA: 3'- -UGCAGCAG----CGGCU----------CGA--------------GUAGUUCACC- -5' |
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8993 | 5' | -53.7 | NC_002512.2 | + | 184970 | 0.67 | 0.980284 |
Target: 5'- aGCG-CGUcCGCCGcGCggcCGUCGAcGUGGa -3' miRNA: 3'- -UGCaGCA-GCGGCuCGa--GUAGUU-CACC- -5' |
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8993 | 5' | -53.7 | NC_002512.2 | + | 167461 | 0.67 | 0.980284 |
Target: 5'- aGCaUCGUCuCCGAGgUCGUCGAcGUGa -3' miRNA: 3'- -UGcAGCAGcGGCUCgAGUAGUU-CACc -5' |
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8993 | 5' | -53.7 | NC_002512.2 | + | 83135 | 0.67 | 0.975724 |
Target: 5'- uCGUcccCGUCGUCGAGgUCGUCGGGcccGGc -3' miRNA: 3'- uGCA---GCAGCGGCUCgAGUAGUUCa--CC- -5' |
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8993 | 5' | -53.7 | NC_002512.2 | + | 106638 | 0.67 | 0.975478 |
Target: 5'- gGCGcCgGUCGUCGAGCUCgaagaaGUCGAGcccgcacUGGg -3' miRNA: 3'- -UGCaG-CAGCGGCUCGAG------UAGUUC-------ACC- -5' |
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8993 | 5' | -53.7 | NC_002512.2 | + | 212994 | 0.68 | 0.970437 |
Target: 5'- --aUCGUCGCCGcGGC-CGUCGGGcccgGGg -3' miRNA: 3'- ugcAGCAGCGGC-UCGaGUAGUUCa---CC- -5' |
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8993 | 5' | -53.7 | NC_002512.2 | + | 8242 | 0.68 | 0.970437 |
Target: 5'- aGCGUCG-CGCCGuagagcagGGC-CGcCGGGUGGa -3' miRNA: 3'- -UGCAGCaGCGGC--------UCGaGUaGUUCACC- -5' |
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8993 | 5' | -53.7 | NC_002512.2 | + | 47454 | 0.68 | 0.964373 |
Target: 5'- gGCGgaggcCGagGCCGAGUUCcgCAaggcGGUGGa -3' miRNA: 3'- -UGCa----GCagCGGCUCGAGuaGU----UCACC- -5' |
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8993 | 5' | -53.7 | NC_002512.2 | + | 73111 | 0.68 | 0.961035 |
Target: 5'- gGCGUgGUCGcCCGAGaCgccCGUCGAGUa- -3' miRNA: 3'- -UGCAgCAGC-GGCUC-Ga--GUAGUUCAcc -5' |
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8993 | 5' | -53.7 | NC_002512.2 | + | 128181 | 0.68 | 0.961035 |
Target: 5'- gACGagGUCGCCGAGCgggCcgCcGGcGGg -3' miRNA: 3'- -UGCagCAGCGGCUCGa--GuaGuUCaCC- -5' |
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8993 | 5' | -53.7 | NC_002512.2 | + | 5635 | 0.68 | 0.961035 |
Target: 5'- gGCGUCGggCGCCGAcccgccucccccGCUCAUUAAagaucUGGa -3' miRNA: 3'- -UGCAGCa-GCGGCU------------CGAGUAGUUc----ACC- -5' |
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8993 | 5' | -53.7 | NC_002512.2 | + | 135253 | 0.68 | 0.961035 |
Target: 5'- cCGUCGUccgCGCCGcGCUCGaCGAGgccUGGg -3' miRNA: 3'- uGCAGCA---GCGGCuCGAGUaGUUC---ACC- -5' |
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8993 | 5' | -53.7 | NC_002512.2 | + | 44796 | 0.68 | 0.959993 |
Target: 5'- aACGcCGUCuugacguagaagcgGCCGAGCUCccgGUCGAGgcccGGg -3' miRNA: 3'- -UGCaGCAG--------------CGGCUCGAG---UAGUUCa---CC- -5' |
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8993 | 5' | -53.7 | NC_002512.2 | + | 89797 | 0.68 | 0.957487 |
Target: 5'- aGCGUCGUCGUCucGUUCuUCGuccgguacugauAGUGGg -3' miRNA: 3'- -UGCAGCAGCGGcuCGAGuAGU------------UCACC- -5' |
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8993 | 5' | -53.7 | NC_002512.2 | + | 137341 | 0.69 | 0.953724 |
Target: 5'- gACGUCGUCGCCGcGGCcgCcgCGGccGGg -3' miRNA: 3'- -UGCAGCAGCGGC-UCGa-GuaGUUcaCC- -5' |
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8993 | 5' | -53.7 | NC_002512.2 | + | 49424 | 0.69 | 0.953724 |
Target: 5'- gACG-CGaCGCCGAGC-CGUCGAGa-- -3' miRNA: 3'- -UGCaGCaGCGGCUCGaGUAGUUCacc -5' |
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8993 | 5' | -53.7 | NC_002512.2 | + | 175581 | 0.69 | 0.949742 |
Target: 5'- gGCGggucaccaCGUCGCCGuGCggguccuUCGGGUGGg -3' miRNA: 3'- -UGCa-------GCAGCGGCuCGagu----AGUUCACC- -5' |
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8993 | 5' | -53.7 | NC_002512.2 | + | 90559 | 0.7 | 0.926466 |
Target: 5'- uGCGaUCGaaagaCGCCGuGCUCAagAGGUGGc -3' miRNA: 3'- -UGC-AGCa----GCGGCuCGAGUagUUCACC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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