miRNA display CGI


Results 41 - 60 of 275 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8994 3' -61.5 NC_002512.2 + 112775 0.66 0.79104
Target:  5'- cGGGGCcccgugccgcuguGCCGGGuccagggcGGCCCGcACCUCCa- -3'
miRNA:   3'- -CUCCG-------------UGGCCC--------UUGGGCuUGGGGGcu -5'
8994 3' -61.5 NC_002512.2 + 3588 0.66 0.78076
Target:  5'- cAGGCcCCGGGggUCUcggggacaggcgcaGAGCCCgCGGu -3'
miRNA:   3'- cUCCGuGGCCCuuGGG--------------CUUGGGgGCU- -5'
8994 3' -61.5 NC_002512.2 + 18093 0.66 0.78076
Target:  5'- --cGCGgCGGGAcggcccccgcggccACCCGGGCCUCCa- -3'
miRNA:   3'- cucCGUgGCCCU--------------UGGGCUUGGGGGcu -5'
8994 3' -61.5 NC_002512.2 + 69954 0.66 0.783346
Target:  5'- -cGGcCACCGGGGACguaUCGcacaaGGCCCCCa- -3'
miRNA:   3'- cuCC-GUGGCCCUUG---GGC-----UUGGGGGcu -5'
8994 3' -61.5 NC_002512.2 + 86129 0.66 0.783346
Target:  5'- gGAGGUcgcggACCuGGAAgCCGAcgccgcggccGCCUCCGAg -3'
miRNA:   3'- -CUCCG-----UGGcCCUUgGGCU----------UGGGGGCU- -5'
8994 3' -61.5 NC_002512.2 + 43908 0.66 0.783346
Target:  5'- -cGGCGCaGGGAcaGgCCGuuGCCCUCGAg -3'
miRNA:   3'- cuCCGUGgCCCU--UgGGCu-UGGGGGCU- -5'
8994 3' -61.5 NC_002512.2 + 24233 0.66 0.783346
Target:  5'- cGAGGCGUCGGGccCgCCGAcggcguCCCCCGc -3'
miRNA:   3'- -CUCCGUGGCCCuuG-GGCUu-----GGGGGCu -5'
8994 3' -61.5 NC_002512.2 + 225587 0.66 0.788487
Target:  5'- aGGGGCGCCGGGucuucgaccagcuGGCcgucgucguccgguCCGAcgaccuguauCCCCCGAa -3'
miRNA:   3'- -CUCCGUGGCCC-------------UUG--------------GGCUu---------GGGGGCU- -5'
8994 3' -61.5 NC_002512.2 + 221710 0.66 0.783346
Target:  5'- -cGGCcUCGGGugcuACgCCGAgAUCCCCGAg -3'
miRNA:   3'- cuCCGuGGCCCu---UG-GGCU-UGGGGGCU- -5'
8994 3' -61.5 NC_002512.2 + 206966 0.66 0.786778
Target:  5'- cGAGGuCAgcaggaagaagccgcCCGGGAuGCCCGuGGCCCgCGGg -3'
miRNA:   3'- -CUCC-GU---------------GGCCCU-UGGGC-UUGGGgGCU- -5'
8994 3' -61.5 NC_002512.2 + 192198 0.66 0.800308
Target:  5'- -cGGC-UgGGGAggACCCGGACCCUuCGGc -3'
miRNA:   3'- cuCCGuGgCCCU--UGGGCUUGGGG-GCU- -5'
8994 3' -61.5 NC_002512.2 + 190949 0.66 0.79104
Target:  5'- cGGGcGCACgCGGGcGCCCGccgcggcGGCCCCUc- -3'
miRNA:   3'- -CUC-CGUG-GCCCuUGGGC-------UUGGGGGcu -5'
8994 3' -61.5 NC_002512.2 + 94283 0.66 0.79104
Target:  5'- -uGGCguccacgGCCGGGGagcggucguccACCCGGuuGCgCCCCGGc -3'
miRNA:   3'- cuCCG-------UGGCCCU-----------UGGGCU--UG-GGGGCU- -5'
8994 3' -61.5 NC_002512.2 + 97232 0.66 0.799472
Target:  5'- cGAGGCGCUGGGAgaggaGCUgCGGGCCgaguguaagcgguUCCGGg -3'
miRNA:   3'- -CUCCGUGGCCCU-----UGG-GCUUGG-------------GGGCU- -5'
8994 3' -61.5 NC_002512.2 + 69395 0.66 0.807771
Target:  5'- -cGGCGCCGcggagauGGAACCCacGAacaugcgcucguGCCCCgCGAa -3'
miRNA:   3'- cuCCGUGGC-------CCUUGGG--CU------------UGGGG-GCU- -5'
8994 3' -61.5 NC_002512.2 + 25080 0.66 0.808593
Target:  5'- --cGCGCCcccGGGACgCGGACCuCCCGGg -3'
miRNA:   3'- cucCGUGGc--CCUUGgGCUUGG-GGGCU- -5'
8994 3' -61.5 NC_002512.2 + 134158 0.66 0.808593
Target:  5'- cGGGUAcCCGucGACCCGGACCCUggCGGc -3'
miRNA:   3'- cUCCGU-GGCccUUGGGCUUGGGG--GCU- -5'
8994 3' -61.5 NC_002512.2 + 78670 0.66 0.783346
Target:  5'- -cGGCGCCGGG-GCUCGGAgCCUa-- -3'
miRNA:   3'- cuCCGUGGCCCuUGGGCUUgGGGgcu -5'
8994 3' -61.5 NC_002512.2 + 129565 0.66 0.774684
Target:  5'- cGAGGC-CCGGGAGgCCGuGGCCgaCCu- -3'
miRNA:   3'- -CUCCGuGGCCCUUgGGC-UUGGg-GGcu -5'
8994 3' -61.5 NC_002512.2 + 226496 0.66 0.774684
Target:  5'- -uGGUccuCUGGGGACCUguGGGCCCCgCGGa -3'
miRNA:   3'- cuCCGu--GGCCCUUGGG--CUUGGGG-GCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.