miRNA display CGI


Results 81 - 100 of 275 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8994 3' -61.5 NC_002512.2 + 64385 0.67 0.739001
Target:  5'- --aGCGCCGGGAgaagcGCCCcacgcgcAGCCaCCCGAa -3'
miRNA:   3'- cucCGUGGCCCU-----UGGGc------UUGG-GGGCU- -5'
8994 3' -61.5 NC_002512.2 + 137068 0.67 0.739001
Target:  5'- gGAGGCGCCGc--GCCCGGgaacagGCCCgCGGu -3'
miRNA:   3'- -CUCCGUGGCccuUGGGCU------UGGGgGCU- -5'
8994 3' -61.5 NC_002512.2 + 2694 0.67 0.739001
Target:  5'- --cGCGCgCGGGAGCgccugCCGcuCCCCCGGc -3'
miRNA:   3'- cucCGUG-GCCCUUG-----GGCuuGGGGGCU- -5'
8994 3' -61.5 NC_002512.2 + 8163 0.67 0.739001
Target:  5'- cAGGCGCuCGGGGAUCuCGGcguaGCaCCCGAg -3'
miRNA:   3'- cUCCGUG-GCCCUUGG-GCU----UGgGGGCU- -5'
8994 3' -61.5 NC_002512.2 + 8792 0.67 0.739001
Target:  5'- gGAGGCGCCGGaGGGCgucccccacgCCGuuccGCCgCCGGa -3'
miRNA:   3'- -CUCCGUGGCC-CUUG----------GGCu---UGGgGGCU- -5'
8994 3' -61.5 NC_002512.2 + 122793 0.67 0.739001
Target:  5'- aGGGCGCCGGGcccuGGCggCGggUCCCCu- -3'
miRNA:   3'- cUCCGUGGCCC----UUGg-GCuuGGGGGcu -5'
8994 3' -61.5 NC_002512.2 + 35328 0.67 0.726181
Target:  5'- aGGGGCAcggccuucCCGGGGcgguuacgguuguCCCGGGCCUCCa- -3'
miRNA:   3'- -CUCCGU--------GGCCCUu------------GGGCUUGGGGGcu -5'
8994 3' -61.5 NC_002512.2 + 52765 0.67 0.720643
Target:  5'- cGGGCccuGCUGGcGcACCCGGACCUCCu- -3'
miRNA:   3'- cUCCG---UGGCC-CuUGGGCUUGGGGGcu -5'
8994 3' -61.5 NC_002512.2 + 134871 0.67 0.720643
Target:  5'- cGGGCGacgccgUCGGGGACCUGGACUgCUCGGa -3'
miRNA:   3'- cUCCGU------GGCCCUUGGGCUUGG-GGGCU- -5'
8994 3' -61.5 NC_002512.2 + 106707 0.67 0.748062
Target:  5'- uGGGGCucuCCGGGAugaCCGcGCUCCUGu -3'
miRNA:   3'- -CUCCGu--GGCCCUug-GGCuUGGGGGCu -5'
8994 3' -61.5 NC_002512.2 + 229227 0.67 0.748062
Target:  5'- cAGGCAgCGGaGAGCCCaacACCCacaCCGAg -3'
miRNA:   3'- cUCCGUgGCC-CUUGGGcu-UGGG---GGCU- -5'
8994 3' -61.5 NC_002512.2 + 67776 0.67 0.745353
Target:  5'- -cGGCGCCGGGGucgucggugagcugGCCucagCGGucACCCCCa- -3'
miRNA:   3'- cuCCGUGGCCCU--------------UGG----GCU--UGGGGGcu -5'
8994 3' -61.5 NC_002512.2 + 65624 0.67 0.748062
Target:  5'- cGAGGCgAUCG---ACCCGAcgGCCCCCGc -3'
miRNA:   3'- -CUCCG-UGGCccuUGGGCU--UGGGGGCu -5'
8994 3' -61.5 NC_002512.2 + 130136 0.67 0.70202
Target:  5'- cGGGGUggugucgcgGCCGcGGGGCCCGGcggcgggccgGCCCgCGAc -3'
miRNA:   3'- -CUCCG---------UGGC-CCUUGGGCU----------UGGGgGCU- -5'
8994 3' -61.5 NC_002512.2 + 12357 0.67 0.70202
Target:  5'- -cGGUucaACCaGGuGAACCgCGAcCCCCCGAg -3'
miRNA:   3'- cuCCG---UGG-CC-CUUGG-GCUuGGGGGCU- -5'
8994 3' -61.5 NC_002512.2 + 135215 0.67 0.711361
Target:  5'- cGGGC-CgGGGGGCCCcccGGCCCCgGGc -3'
miRNA:   3'- cUCCGuGgCCCUUGGGc--UUGGGGgCU- -5'
8994 3' -61.5 NC_002512.2 + 80737 0.67 0.711361
Target:  5'- -cGGCACCGGccccgcggcGGuCCCGggUCCCgGGg -3'
miRNA:   3'- cuCCGUGGCC---------CUuGGGCuuGGGGgCU- -5'
8994 3' -61.5 NC_002512.2 + 107370 0.67 0.711361
Target:  5'- cGGcGCGCCGGGGAgCCaGACCgagaCCGAg -3'
miRNA:   3'- cUC-CGUGGCCCUUgGGcUUGGg---GGCU- -5'
8994 3' -61.5 NC_002512.2 + 120826 0.67 0.711361
Target:  5'- -cGGgACgCGGcGggUCCGGucguCCCCCGAg -3'
miRNA:   3'- cuCCgUG-GCC-CuuGGGCUu---GGGGGCU- -5'
8994 3' -61.5 NC_002512.2 + 101936 0.67 0.751662
Target:  5'- aAGGCGgCGGGcaaguccaagcugguGGCCCGcgGGCCCgCCGGc -3'
miRNA:   3'- cUCCGUgGCCC---------------UUGGGC--UUGGG-GGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.