miRNA display CGI


Results 101 - 120 of 275 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8994 3' -61.5 NC_002512.2 + 128280 0.67 0.748062
Target:  5'- -cGGCGCCGGG---CCGAcgGCCgCCCGc -3'
miRNA:   3'- cuCCGUGGCCCuugGGCU--UGG-GGGCu -5'
8994 3' -61.5 NC_002512.2 + 130226 0.67 0.748062
Target:  5'- -cGGCgGCgGGGAACCUcuGGGCCCCgGc -3'
miRNA:   3'- cuCCG-UGgCCCUUGGG--CUUGGGGgCu -5'
8994 3' -61.5 NC_002512.2 + 226871 0.67 0.748062
Target:  5'- gGAGGC-CCGGGAGgCCaGGAaggCCCGGg -3'
miRNA:   3'- -CUCCGuGGCCCUUgGG-CUUgg-GGGCU- -5'
8994 3' -61.5 NC_002512.2 + 215817 0.67 0.711361
Target:  5'- -cGGgGCCGGGGACUCcc-CUCCCGGc -3'
miRNA:   3'- cuCCgUGGCCCUUGGGcuuGGGGGCU- -5'
8994 3' -61.5 NC_002512.2 + 220132 0.67 0.711361
Target:  5'- cGGGGCGgCGGGuccgGCuCCGccGCCCCCa- -3'
miRNA:   3'- -CUCCGUgGCCCu---UG-GGCu-UGGGGGcu -5'
8994 3' -61.5 NC_002512.2 + 162127 0.67 0.729859
Target:  5'- -cGGCGCCGGaGAcgACCCcGGCUCgCGAg -3'
miRNA:   3'- cuCCGUGGCC-CU--UGGGcUUGGGgGCU- -5'
8994 3' -61.5 NC_002512.2 + 107009 0.67 0.729859
Target:  5'- cGGGGUcgGCCGaGAGCCgGGcgcGCUCCCGAc -3'
miRNA:   3'- -CUCCG--UGGCcCUUGGgCU---UGGGGGCU- -5'
8994 3' -61.5 NC_002512.2 + 208890 0.67 0.72894
Target:  5'- gGAGGgGCCGGGAAucCCCGcgcgggaGGCUCCUa- -3'
miRNA:   3'- -CUCCgUGGCCCUU--GGGC-------UUGGGGGcu -5'
8994 3' -61.5 NC_002512.2 + 124781 0.67 0.729859
Target:  5'- aGGGCuGCCGGG-ACCCGGggagACacgucgaCCCGAc -3'
miRNA:   3'- cUCCG-UGGCCCuUGGGCU----UGg------GGGCU- -5'
8994 3' -61.5 NC_002512.2 + 35328 0.67 0.726181
Target:  5'- aGGGGCAcggccuucCCGGGGcgguuacgguuguCCCGGGCCUCCa- -3'
miRNA:   3'- -CUCCGU--------GGCCCUu------------GGGCUUGGGGGcu -5'
8994 3' -61.5 NC_002512.2 + 52765 0.67 0.720643
Target:  5'- cGGGCccuGCUGGcGcACCCGGACCUCCu- -3'
miRNA:   3'- cUCCG---UGGCC-CuUGGGCUUGGGGGcu -5'
8994 3' -61.5 NC_002512.2 + 134871 0.67 0.720643
Target:  5'- cGGGCGacgccgUCGGGGACCUGGACUgCUCGGa -3'
miRNA:   3'- cUCCGU------GGCCCUUGGGCUUGG-GGGCU- -5'
8994 3' -61.5 NC_002512.2 + 120826 0.67 0.711361
Target:  5'- -cGGgACgCGGcGggUCCGGucguCCCCCGAg -3'
miRNA:   3'- cuCCgUG-GCC-CuuGGGCUu---GGGGGCU- -5'
8994 3' -61.5 NC_002512.2 + 107370 0.67 0.711361
Target:  5'- cGGcGCGCCGGGGAgCCaGACCgagaCCGAg -3'
miRNA:   3'- cUC-CGUGGCCCUUgGGcUUGGg---GGCU- -5'
8994 3' -61.5 NC_002512.2 + 80737 0.67 0.711361
Target:  5'- -cGGCACCGGccccgcggcGGuCCCGggUCCCgGGg -3'
miRNA:   3'- cuCCGUGGCC---------CUuGGGCuuGGGGgCU- -5'
8994 3' -61.5 NC_002512.2 + 135215 0.67 0.711361
Target:  5'- cGGGC-CgGGGGGCCCcccGGCCCCgGGc -3'
miRNA:   3'- cUCCGuGgCCCUUGGGc--UUGGGGgCU- -5'
8994 3' -61.5 NC_002512.2 + 12357 0.67 0.70202
Target:  5'- -cGGUucaACCaGGuGAACCgCGAcCCCCCGAg -3'
miRNA:   3'- cuCCG---UGG-CC-CUUGG-GCUuGGGGGCU- -5'
8994 3' -61.5 NC_002512.2 + 130136 0.67 0.70202
Target:  5'- cGGGGUggugucgcgGCCGcGGGGCCCGGcggcgggccgGCCCgCGAc -3'
miRNA:   3'- -CUCCG---------UGGC-CCUUGGGCU----------UGGGgGCU- -5'
8994 3' -61.5 NC_002512.2 + 94826 0.67 0.70202
Target:  5'- cGGGCGCCcgacaggcaGGGGCUguacgcgucagaCGGGCCCCCGAu -3'
miRNA:   3'- cUCCGUGGc--------CCUUGG------------GCUUGGGGGCU- -5'
8994 3' -61.5 NC_002512.2 + 200103 0.67 0.727102
Target:  5'- cGGGGuCGCCGGGGuacuucagcaucGCcgucgcgucgaucgCCGGGCCCCCu- -3'
miRNA:   3'- -CUCC-GUGGCCCU------------UG--------------GGCUUGGGGGcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.