miRNA display CGI


Results 121 - 140 of 275 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8994 3' -61.5 NC_002512.2 + 134871 0.67 0.720643
Target:  5'- cGGGCGacgccgUCGGGGACCUGGACUgCUCGGa -3'
miRNA:   3'- cUCCGU------GGCCCUUGGGCUUGG-GGGCU- -5'
8994 3' -61.5 NC_002512.2 + 35328 0.67 0.726181
Target:  5'- aGGGGCAcggccuucCCGGGGcgguuacgguuguCCCGGGCCUCCa- -3'
miRNA:   3'- -CUCCGU--------GGCCCUu------------GGGCUUGGGGGcu -5'
8994 3' -61.5 NC_002512.2 + 124781 0.67 0.729859
Target:  5'- aGGGCuGCCGGG-ACCCGGggagACacgucgaCCCGAc -3'
miRNA:   3'- cUCCG-UGGCCCuUGGGCU----UGg------GGGCU- -5'
8994 3' -61.5 NC_002512.2 + 79941 0.67 0.729859
Target:  5'- cGAGGCgGCgCGGGggUCCGccuGCCgUCGGa -3'
miRNA:   3'- -CUCCG-UG-GCCCuuGGGCu--UGGgGGCU- -5'
8994 3' -61.5 NC_002512.2 + 130136 0.67 0.70202
Target:  5'- cGGGGUggugucgcgGCCGcGGGGCCCGGcggcgggccgGCCCgCGAc -3'
miRNA:   3'- -CUCCG---------UGGC-CCUUGGGCU----------UGGGgGCU- -5'
8994 3' -61.5 NC_002512.2 + 121342 0.68 0.664218
Target:  5'- aAGGC-CCGGcGGACCuucuccgccguCGggUCCCCGGc -3'
miRNA:   3'- cUCCGuGGCC-CUUGG-----------GCuuGGGGGCU- -5'
8994 3' -61.5 NC_002512.2 + 42195 0.68 0.67372
Target:  5'- cGGGGguUCGGGuuCCCGGuGCCUCCGc -3'
miRNA:   3'- -CUCCguGGCCCuuGGGCU-UGGGGGCu -5'
8994 3' -61.5 NC_002512.2 + 73393 0.68 0.686972
Target:  5'- cAGGcCGCCGuGuccgcccagcccgccGAGCCCGccGCCCCCGAg -3'
miRNA:   3'- cUCC-GUGGC-C---------------CUUGGGCu-UGGGGGCU- -5'
8994 3' -61.5 NC_002512.2 + 69120 0.68 0.643243
Target:  5'- -cGGCcccgcuCCGGGAccuccguGCCCGGGgccggcgccguucCCCCCGAa -3'
miRNA:   3'- cuCCGu-----GGCCCU-------UGGGCUU-------------GGGGGCU- -5'
8994 3' -61.5 NC_002512.2 + 97281 0.68 0.677513
Target:  5'- --cGCAUCGGGGAggccgagcgucugcuCgCCGAACCCCUGGc -3'
miRNA:   3'- cucCGUGGCCCUU---------------G-GGCUUGGGGGCU- -5'
8994 3' -61.5 NC_002512.2 + 127869 0.68 0.67372
Target:  5'- uGGGCGCgCGGGAcggguguuuUCCG-ACCCUCGAa -3'
miRNA:   3'- cUCCGUG-GCCCUu--------GGGCuUGGGGGCU- -5'
8994 3' -61.5 NC_002512.2 + 102955 0.68 0.682246
Target:  5'- cGGGGCGCgggCGGGuaucgccAGCCCGGccucCCCCCGc -3'
miRNA:   3'- -CUCCGUG---GCCC-------UUGGGCUu---GGGGGCu -5'
8994 3' -61.5 NC_002512.2 + 3503 0.68 0.67372
Target:  5'- -cGGCGCCGucgucGGcccuccACCCGAGCCCgCGGg -3'
miRNA:   3'- cuCCGUGGC-----CCu-----UGGGCUUGGGgGCU- -5'
8994 3' -61.5 NC_002512.2 + 29562 0.68 0.683192
Target:  5'- gGAGGaCGCCggcGGGAAgCCGc-UCCCCGAg -3'
miRNA:   3'- -CUCC-GUGG---CCCUUgGGCuuGGGGGCU- -5'
8994 3' -61.5 NC_002512.2 + 84466 0.68 0.682246
Target:  5'- --aGCACCGcggcGGAcgagccgaagaagACCCGGACCCCgGAc -3'
miRNA:   3'- cucCGUGGC----CCU-------------UGGGCUUGGGGgCU- -5'
8994 3' -61.5 NC_002512.2 + 79686 0.68 0.683192
Target:  5'- -cGGCcuCCGGGuuCCCGGAUCCCUc- -3'
miRNA:   3'- cuCCGu-GGCCCuuGGGCUUGGGGGcu -5'
8994 3' -61.5 NC_002512.2 + 127917 0.68 0.693569
Target:  5'- gGAGGCGagggcggaucgguaGGGuACCCGAGgCCCCGu -3'
miRNA:   3'- -CUCCGUgg------------CCCuUGGGCUUgGGGGCu -5'
8994 3' -61.5 NC_002512.2 + 1917 0.68 0.64897
Target:  5'- -cGGCGCCGGG-GCCCuccucuccggcuCCCCCGc -3'
miRNA:   3'- cuCCGUGGCCCuUGGGcuu---------GGGGGCu -5'
8994 3' -61.5 NC_002512.2 + 136086 0.68 0.645153
Target:  5'- gGGGGCcgGCUGcGGAcgcccgucACCCGAuccGCUCCCGAc -3'
miRNA:   3'- -CUCCG--UGGC-CCU--------UGGGCU---UGGGGGCU- -5'
8994 3' -61.5 NC_002512.2 + 62308 0.68 0.645153
Target:  5'- aGAGGCggcggaugACCGGGAagaAgCCGAcgggcACCCCCu- -3'
miRNA:   3'- -CUCCG--------UGGCCCU---UgGGCU-----UGGGGGcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.