Results 21 - 40 of 275 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8994 | 3' | -61.5 | NC_002512.2 | + | 126381 | 0.74 | 0.348536 |
Target: 5'- -uGGCcgcCCGGGAgagcGCCCGGGgCCCCGGg -3' miRNA: 3'- cuCCGu--GGCCCU----UGGGCUUgGGGGCU- -5' |
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8994 | 3' | -61.5 | NC_002512.2 | + | 132988 | 0.74 | 0.363248 |
Target: 5'- cGGGUaguaGCagGGGAACCCG-GCCCCCGGg -3' miRNA: 3'- cUCCG----UGg-CCCUUGGGCuUGGGGGCU- -5' |
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8994 | 3' | -61.5 | NC_002512.2 | + | 159152 | 0.74 | 0.355839 |
Target: 5'- uGAGGCgGCCGGGcgcgcuCCCGucCCCCCGu -3' miRNA: 3'- -CUCCG-UGGCCCuu----GGGCuuGGGGGCu -5' |
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8994 | 3' | -61.5 | NC_002512.2 | + | 122797 | 0.74 | 0.363248 |
Target: 5'- cGGGcCGCCGaccGACCCGAccGCCCCCGAg -3' miRNA: 3'- cUCC-GUGGCcc-UUGGGCU--UGGGGGCU- -5' |
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8994 | 3' | -61.5 | NC_002512.2 | + | 201357 | 0.74 | 0.355839 |
Target: 5'- cGGGCGgCGGcGGACCCGAcagcucACCCCCu- -3' miRNA: 3'- cUCCGUgGCC-CUUGGGCU------UGGGGGcu -5' |
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8994 | 3' | -61.5 | NC_002512.2 | + | 218662 | 0.74 | 0.348536 |
Target: 5'- gGAGGCGgauacCCGGGcACaCCGGGCCCgCCGGa -3' miRNA: 3'- -CUCCGU-----GGCCCuUG-GGCUUGGG-GGCU- -5' |
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8994 | 3' | -61.5 | NC_002512.2 | + | 121928 | 0.74 | 0.341341 |
Target: 5'- cGAGGCGgCGGcGGuCCCGGACCCgCGGc -3' miRNA: 3'- -CUCCGUgGCC-CUuGGGCUUGGGgGCU- -5' |
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8994 | 3' | -61.5 | NC_002512.2 | + | 134593 | 0.73 | 0.39394 |
Target: 5'- -cGGCGCCucguccgccgacGGGAACCCGAcCCCgCCGu -3' miRNA: 3'- cuCCGUGG------------CCCUUGGGCUuGGG-GGCu -5' |
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8994 | 3' | -61.5 | NC_002512.2 | + | 153204 | 0.73 | 0.401872 |
Target: 5'- -cGGCACCcGGGACCCGuccCgCCCCGGu -3' miRNA: 3'- cuCCGUGGcCCUUGGGCuu-G-GGGGCU- -5' |
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8994 | 3' | -61.5 | NC_002512.2 | + | 117885 | 0.73 | 0.418035 |
Target: 5'- -cGGaCGCCGGGGGCCCGucgcuGCUCCaCGGc -3' miRNA: 3'- cuCC-GUGGCCCUUGGGCu----UGGGG-GCU- -5' |
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8994 | 3' | -61.5 | NC_002512.2 | + | 94919 | 0.73 | 0.417217 |
Target: 5'- cGGGCAgacagcuCCGGaucacggcGAGCCgGAGCCCCCGGa -3' miRNA: 3'- cUCCGU-------GGCC--------CUUGGgCUUGGGGGCU- -5' |
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8994 | 3' | -61.5 | NC_002512.2 | + | 156996 | 0.73 | 0.409904 |
Target: 5'- -cGGcCGCCGcuucGGGCCCGAGCCCCgCGAc -3' miRNA: 3'- cuCC-GUGGCc---CUUGGGCUUGGGG-GCU- -5' |
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8994 | 3' | -61.5 | NC_002512.2 | + | 77319 | 0.73 | 0.409904 |
Target: 5'- cGAGGCGaCGGGGuCUCGGGCUCCUGAc -3' miRNA: 3'- -CUCCGUgGCCCUuGGGCUUGGGGGCU- -5' |
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8994 | 3' | -61.5 | NC_002512.2 | + | 16938 | 0.73 | 0.386111 |
Target: 5'- gGAGGCGCCguaGGGcGACUCGGACCgggcgCCCGAu -3' miRNA: 3'- -CUCCGUGG---CCC-UUGGGCUUGG-----GGGCU- -5' |
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8994 | 3' | -61.5 | NC_002512.2 | + | 15232 | 0.73 | 0.38923 |
Target: 5'- cGAGGCGCCGGGagGagagacugcgaggcgGCCCGcgUCCCCGc -3' miRNA: 3'- -CUCCGUGGCCC--U---------------UGGGCuuGGGGGCu -5' |
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8994 | 3' | -61.5 | NC_002512.2 | + | 221847 | 0.72 | 0.434588 |
Target: 5'- gGGGGCGCCucGGGACCgGGACCUCuCGGa -3' miRNA: 3'- -CUCCGUGGc-CCUUGGgCUUGGGG-GCU- -5' |
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8994 | 3' | -61.5 | NC_002512.2 | + | 21186 | 0.72 | 0.468794 |
Target: 5'- -cGGCGagccCCGGGuACCCGuccagggacagcGGCCCCCGGg -3' miRNA: 3'- cuCCGU----GGCCCuUGGGC------------UUGGGGGCU- -5' |
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8994 | 3' | -61.5 | NC_002512.2 | + | 220313 | 0.72 | 0.426263 |
Target: 5'- cGGGGgGCCGGGGG-CCGGGCUCCgGGg -3' miRNA: 3'- -CUCCgUGGCCCUUgGGCUUGGGGgCU- -5' |
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8994 | 3' | -61.5 | NC_002512.2 | + | 81432 | 0.72 | 0.468794 |
Target: 5'- -cGGCuccgucccGCgGGGGGCCCG-GCCCCCGu -3' miRNA: 3'- cuCCG--------UGgCCCUUGGGCuUGGGGGCu -5' |
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8994 | 3' | -61.5 | NC_002512.2 | + | 75085 | 0.72 | 0.434588 |
Target: 5'- cGAGGCGCCguuucGGGGGCUCGAcgucGCCgCCUGGc -3' miRNA: 3'- -CUCCGUGG-----CCCUUGGGCU----UGG-GGGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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