miRNA display CGI


Results 41 - 60 of 275 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8994 3' -61.5 NC_002512.2 + 12410 0.72 0.468794
Target:  5'- -cGGCGCCGGGAuCgCGAGCUCgCCGc -3'
miRNA:   3'- cuCCGUGGCCCUuGgGCUUGGG-GGCu -5'
8994 3' -61.5 NC_002512.2 + 220313 0.72 0.426263
Target:  5'- cGGGGgGCCGGGGG-CCGGGCUCCgGGg -3'
miRNA:   3'- -CUCCgUGGCCCUUgGGCUUGGGGgCU- -5'
8994 3' -61.5 NC_002512.2 + 221847 0.72 0.434588
Target:  5'- gGGGGCGCCucGGGACCgGGACCUCuCGGa -3'
miRNA:   3'- -CUCCGUGGc-CCUUGGgCUUGGGG-GCU- -5'
8994 3' -61.5 NC_002512.2 + 208423 0.72 0.451514
Target:  5'- cGGGCGCCGcu--CCCGGcgccgGCCCCCGAu -3'
miRNA:   3'- cUCCGUGGCccuuGGGCU-----UGGGGGCU- -5'
8994 3' -61.5 NC_002512.2 + 190423 0.72 0.459247
Target:  5'- gGGGGCugCGGGAGCgggccgucaccgaCCGGgacgugaccuccACCCCCGu -3'
miRNA:   3'- -CUCCGugGCCCUUG-------------GGCU------------UGGGGGCu -5'
8994 3' -61.5 NC_002512.2 + 110307 0.72 0.451514
Target:  5'- -uGGCGCgaGGGGACCCGccgGGCUCCCGc -3'
miRNA:   3'- cuCCGUGg-CCCUUGGGC---UUGGGGGCu -5'
8994 3' -61.5 NC_002512.2 + 196189 0.71 0.522529
Target:  5'- gGGGGCgacgGCCGGGucCCuggCGAGCCUCCGGc -3'
miRNA:   3'- -CUCCG----UGGCCCuuGG---GCUUGGGGGCU- -5'
8994 3' -61.5 NC_002512.2 + 108435 0.71 0.513396
Target:  5'- -cGGgGCCGGGGGCCgGGGggucccUCCCCGGg -3'
miRNA:   3'- cuCCgUGGCCCUUGGgCUU------GGGGGCU- -5'
8994 3' -61.5 NC_002512.2 + 4523 0.71 0.513396
Target:  5'- uGAGuuGCCGGG-ACCCGGACaccaauaCCCGGa -3'
miRNA:   3'- -CUCcgUGGCCCuUGGGCUUGg------GGGCU- -5'
8994 3' -61.5 NC_002512.2 + 213671 0.71 0.513396
Target:  5'- gGAGGCGgagGGGAGCCCGGcgucGCCCgCGGu -3'
miRNA:   3'- -CUCCGUgg-CCCUUGGGCU----UGGGgGCU- -5'
8994 3' -61.5 NC_002512.2 + 133493 0.71 0.511577
Target:  5'- cGAGGcCGCCGGuGAGucCCCGGuuuccucuccucCCCCCGAg -3'
miRNA:   3'- -CUCC-GUGGCC-CUU--GGGCUu-----------GGGGGCU- -5'
8994 3' -61.5 NC_002512.2 + 18435 0.71 0.513396
Target:  5'- cGGGGCAgCCGcaGGcGCCCGAGCUCCgGGc -3'
miRNA:   3'- -CUCCGU-GGC--CCuUGGGCUUGGGGgCU- -5'
8994 3' -61.5 NC_002512.2 + 126280 0.71 0.513396
Target:  5'- -cGGUACCGGGAGgCCGucgacaccGCCCUCGu -3'
miRNA:   3'- cuCCGUGGCCCUUgGGCu-------UGGGGGCu -5'
8994 3' -61.5 NC_002512.2 + 99912 0.71 0.513396
Target:  5'- aGGGCGCCGGGGGCCCG-----CCGAa -3'
miRNA:   3'- cUCCGUGGCCCUUGGGCuugggGGCU- -5'
8994 3' -61.5 NC_002512.2 + 53424 0.71 0.504328
Target:  5'- cAGGagaagagaGCCGcGGAACCCGAcaCCCCGAc -3'
miRNA:   3'- cUCCg-------UGGC-CCUUGGGCUugGGGGCU- -5'
8994 3' -61.5 NC_002512.2 + 3885 0.71 0.503426
Target:  5'- gGAGucaGCACCGGcguCCCGGuccccuuGCCCCCGAg -3'
miRNA:   3'- -CUC---CGUGGCCcuuGGGCU-------UGGGGGCU- -5'
8994 3' -61.5 NC_002512.2 + 38349 0.71 0.477561
Target:  5'- cGGGGaucCGCCGGGucGCCCGA-CCCCaCGGc -3'
miRNA:   3'- -CUCC---GUGGCCCu-UGGGCUuGGGG-GCU- -5'
8994 3' -61.5 NC_002512.2 + 97974 0.71 0.477561
Target:  5'- aGGGGCGCCGGuacGCCCcggGGACCUUCGAc -3'
miRNA:   3'- -CUCCGUGGCCcu-UGGG---CUUGGGGGCU- -5'
8994 3' -61.5 NC_002512.2 + 129942 0.71 0.517041
Target:  5'- cAGGCACCGGcGGcagcagcaGCCgacgccgcccuucggCGGGCCCCCGGc -3'
miRNA:   3'- cUCCGUGGCC-CU--------UGG---------------GCUUGGGGGCU- -5'
8994 3' -61.5 NC_002512.2 + 103493 0.71 0.522529
Target:  5'- -cGGCGcCCGGGGcCCCGGGCgcucUCCCGGg -3'
miRNA:   3'- cuCCGU-GGCCCUuGGGCUUG----GGGGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.