miRNA display CGI


Results 61 - 80 of 275 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8994 3' -61.5 NC_002512.2 + 38349 0.71 0.477561
Target:  5'- cGGGGaucCGCCGGGucGCCCGA-CCCCaCGGc -3'
miRNA:   3'- -CUCC---GUGGCCCu-UGGGCUuGGGG-GCU- -5'
8994 3' -61.5 NC_002512.2 + 3885 0.71 0.503426
Target:  5'- gGAGucaGCACCGGcguCCCGGuccccuuGCCCCCGAg -3'
miRNA:   3'- -CUC---CGUGGCCcuuGGGCU-------UGGGGGCU- -5'
8994 3' -61.5 NC_002512.2 + 53424 0.71 0.504328
Target:  5'- cAGGagaagagaGCCGcGGAACCCGAcaCCCCGAc -3'
miRNA:   3'- cUCCg-------UGGC-CCUUGGGCUugGGGGCU- -5'
8994 3' -61.5 NC_002512.2 + 99912 0.71 0.513396
Target:  5'- aGGGCGCCGGGGGCCCG-----CCGAa -3'
miRNA:   3'- cUCCGUGGCCCUUGGGCuugggGGCU- -5'
8994 3' -61.5 NC_002512.2 + 126280 0.71 0.513396
Target:  5'- -cGGUACCGGGAGgCCGucgacaccGCCCUCGu -3'
miRNA:   3'- cuCCGUGGCCCUUgGGCu-------UGGGGGCu -5'
8994 3' -61.5 NC_002512.2 + 18435 0.71 0.513396
Target:  5'- cGGGGCAgCCGcaGGcGCCCGAGCUCCgGGc -3'
miRNA:   3'- -CUCCGU-GGC--CCuUGGGCUUGGGGgCU- -5'
8994 3' -61.5 NC_002512.2 + 103493 0.71 0.522529
Target:  5'- -cGGCGcCCGGGGcCCCGGGCgcucUCCCGGg -3'
miRNA:   3'- cuCCGU-GGCCCUuGGGCUUG----GGGGCU- -5'
8994 3' -61.5 NC_002512.2 + 108435 0.71 0.513396
Target:  5'- -cGGgGCCGGGGGCCgGGGggucccUCCCCGGg -3'
miRNA:   3'- cuCCgUGGCCCUUGGgCUU------GGGGGCU- -5'
8994 3' -61.5 NC_002512.2 + 92644 0.71 0.474922
Target:  5'- -cGGCGCCGGG-ACCCGcgcggauccgggacGGCCgCCCGc -3'
miRNA:   3'- cuCCGUGGCCCuUGGGC--------------UUGG-GGGCu -5'
8994 3' -61.5 NC_002512.2 + 4452 0.7 0.535419
Target:  5'- cGGGCGCgGGGGucggcgucggccccaACCCGA--CCCCGAc -3'
miRNA:   3'- cUCCGUGgCCCU---------------UGGGCUugGGGGCU- -5'
8994 3' -61.5 NC_002512.2 + 90454 0.7 0.550284
Target:  5'- -cGGCgGCCGGGccAGCUgCGggUCCCCGAu -3'
miRNA:   3'- cuCCG-UGGCCC--UUGG-GCuuGGGGGCU- -5'
8994 3' -61.5 NC_002512.2 + 109048 0.7 0.550284
Target:  5'- gGGGGCuCgGGGGACgaCCGGACCCgCCGc -3'
miRNA:   3'- -CUCCGuGgCCCUUG--GGCUUGGG-GGCu -5'
8994 3' -61.5 NC_002512.2 + 4950 0.7 0.578475
Target:  5'- cGAGcGaCACCGGcacGGACCCGGuCCCCgCGAc -3'
miRNA:   3'- -CUC-C-GUGGCC---CUUGGGCUuGGGG-GCU- -5'
8994 3' -61.5 NC_002512.2 + 22999 0.7 0.572808
Target:  5'- -cGGCGCUGGuGAccuacccgucggcgaGCUCGGcgccGCCCCCGAa -3'
miRNA:   3'- cuCCGUGGCC-CU---------------UGGGCU----UGGGGGCU- -5'
8994 3' -61.5 NC_002512.2 + 113418 0.7 0.569038
Target:  5'- uGGGcCGCCGGGAucaccGCCCcg-UCCCCGAg -3'
miRNA:   3'- cUCC-GUGGCCCU-----UGGGcuuGGGGGCU- -5'
8994 3' -61.5 NC_002512.2 + 106380 0.7 0.569038
Target:  5'- cGAGGaaggACCGGGGGCCgagcacccccUGGACCCgCGAg -3'
miRNA:   3'- -CUCCg---UGGCCCUUGG----------GCUUGGGgGCU- -5'
8994 3' -61.5 NC_002512.2 + 149440 0.7 0.578475
Target:  5'- cGGGCGCgGGGGgagaggaaggggACCCGGgacGCCgCCGAc -3'
miRNA:   3'- cUCCGUGgCCCU------------UGGGCU---UGGgGGCU- -5'
8994 3' -61.5 NC_002512.2 + 195351 0.7 0.540977
Target:  5'- -cGGCGCCGGGAACCCcgGGugCUggUCGGc -3'
miRNA:   3'- cuCCGUGGCCCUUGGG--CUugGG--GGCU- -5'
8994 3' -61.5 NC_002512.2 + 97415 0.7 0.569038
Target:  5'- gGAGGC-CgGGGAGagacgcgcgcucCCCGGACCCgCCGc -3'
miRNA:   3'- -CUCCGuGgCCCUU------------GGGCUUGGG-GGCu -5'
8994 3' -61.5 NC_002512.2 + 107283 0.7 0.559639
Target:  5'- cGAGGcCGCCGagacGAACCUGAucUCCCCGAu -3'
miRNA:   3'- -CUCC-GUGGCc---CUUGGGCUu-GGGGGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.