Results 81 - 100 of 275 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8994 | 3' | -61.5 | NC_002512.2 | + | 60860 | 0.7 | 0.550284 |
Target: 5'- -cGGCGCCGcucgcGGAcgccGCCCGGAUCgCCGAg -3' miRNA: 3'- cuCCGUGGC-----CCU----UGGGCUUGGgGGCU- -5' |
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8994 | 3' | -61.5 | NC_002512.2 | + | 3401 | 0.7 | 0.550284 |
Target: 5'- -cGGCGagGGGAgcGCCCGGGCCCCgGc -3' miRNA: 3'- cuCCGUggCCCU--UGGGCUUGGGGgCu -5' |
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8994 | 3' | -61.5 | NC_002512.2 | + | 29170 | 0.7 | 0.550284 |
Target: 5'- -cGGacCGCCGGGcggcAGCCCGAcGCCaCCCGAg -3' miRNA: 3'- cuCC--GUGGCCC----UUGGGCU-UGG-GGGCU- -5' |
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8994 | 3' | -61.5 | NC_002512.2 | + | 5633 | 0.7 | 0.550284 |
Target: 5'- cGGGCGUCGGGcgccGACCCGccuCCCCCGc -3' miRNA: 3'- cUCCGUGGCCC----UUGGGCuu-GGGGGCu -5' |
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8994 | 3' | -61.5 | NC_002512.2 | + | 111983 | 0.7 | 0.540977 |
Target: 5'- -uGGCgcgcugGCCGuGGAGCagcgaCGGGCCCCCGGc -3' miRNA: 3'- cuCCG------UGGC-CCUUGg----GCUUGGGGGCU- -5' |
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8994 | 3' | -61.5 | NC_002512.2 | + | 149440 | 0.7 | 0.578475 |
Target: 5'- cGGGCGCgGGGGgagaggaaggggACCCGGgacGCCgCCGAc -3' miRNA: 3'- cUCCGUGgCCCU------------UGGGCU---UGGgGGCU- -5' |
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8994 | 3' | -61.5 | NC_002512.2 | + | 109048 | 0.7 | 0.550284 |
Target: 5'- gGGGGCuCgGGGGACgaCCGGACCCgCCGc -3' miRNA: 3'- -CUCCGuGgCCCUUG--GGCUUGGG-GGCu -5' |
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8994 | 3' | -61.5 | NC_002512.2 | + | 226400 | 0.7 | 0.559639 |
Target: 5'- -cGGCGCCGGG-ACCCGucGCgUCCGc -3' miRNA: 3'- cuCCGUGGCCCuUGGGCu-UGgGGGCu -5' |
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8994 | 3' | -61.5 | NC_002512.2 | + | 101289 | 0.7 | 0.563393 |
Target: 5'- cAGGUACCcGGAcguCCCGGccucucgcagggucgGCCCCCGGa -3' miRNA: 3'- cUCCGUGGcCCUu--GGGCU---------------UGGGGGCU- -5' |
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8994 | 3' | -61.5 | NC_002512.2 | + | 95709 | 0.7 | 0.568096 |
Target: 5'- cGGGGgGCCGGGAGgggaagacggcucCCCGucCCCgCCGGc -3' miRNA: 3'- -CUCCgUGGCCCUU-------------GGGCuuGGG-GGCU- -5' |
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8994 | 3' | -61.5 | NC_002512.2 | + | 106380 | 0.7 | 0.569038 |
Target: 5'- cGAGGaaggACCGGGGGCCgagcacccccUGGACCCgCGAg -3' miRNA: 3'- -CUCCg---UGGCCCUUGG----------GCUUGGGgGCU- -5' |
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8994 | 3' | -61.5 | NC_002512.2 | + | 118780 | 0.7 | 0.558701 |
Target: 5'- -cGGCGCCuccgccgccgggcGGGAGCUgUGGGCCCCCGu -3' miRNA: 3'- cuCCGUGG-------------CCCUUGG-GCUUGGGGGCu -5' |
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8994 | 3' | -61.5 | NC_002512.2 | + | 133340 | 0.69 | 0.626051 |
Target: 5'- -uGGCGuCCGGGAucCCCGG--CCCCGGc -3' miRNA: 3'- cuCCGU-GGCCCUu-GGGCUugGGGGCU- -5' |
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8994 | 3' | -61.5 | NC_002512.2 | + | 101623 | 0.69 | 0.616503 |
Target: 5'- -cGGCGCCGGG-ACgCGAgucGCCgCUCGAg -3' miRNA: 3'- cuCCGUGGCCCuUGgGCU---UGG-GGGCU- -5' |
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8994 | 3' | -61.5 | NC_002512.2 | + | 130231 | 0.69 | 0.626051 |
Target: 5'- cGAGcUGCCGGGGAUcggcucgggcgCCGGGCCCuCCGAg -3' miRNA: 3'- -CUCcGUGGCCCUUG-----------GGCUUGGG-GGCU- -5' |
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8994 | 3' | -61.5 | NC_002512.2 | + | 103388 | 0.69 | 0.587946 |
Target: 5'- aGAGGCucgcgcccaacGCCGGGGAUCCGGGCgaCgCGAc -3' miRNA: 3'- -CUCCG-----------UGGCCCUUGGGCUUGg-GgGCU- -5' |
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8994 | 3' | -61.5 | NC_002512.2 | + | 49639 | 0.69 | 0.626051 |
Target: 5'- cGGGCgaGCCGGGAccAgUCGGACCCCaCGu -3' miRNA: 3'- cUCCG--UGGCCCU--UgGGCUUGGGG-GCu -5' |
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8994 | 3' | -61.5 | NC_002512.2 | + | 173978 | 0.69 | 0.597445 |
Target: 5'- gGAGGCGCaCGGGAgaugGCUCcAGCCCCUc- -3' miRNA: 3'- -CUCCGUG-GCCCU----UGGGcUUGGGGGcu -5' |
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8994 | 3' | -61.5 | NC_002512.2 | + | 75345 | 0.69 | 0.625096 |
Target: 5'- cGGGCGCuCcGGAuuggucgGCCCGAACCgCCGGc -3' miRNA: 3'- cUCCGUG-GcCCU-------UGGGCUUGGgGGCU- -5' |
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8994 | 3' | -61.5 | NC_002512.2 | + | 102905 | 0.69 | 0.616503 |
Target: 5'- --cGCGCUGGGAgaggACCgCGGACCCCUa- -3' miRNA: 3'- cucCGUGGCCCU----UGG-GCUUGGGGGcu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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