miRNA display CGI


Results 121 - 140 of 275 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8994 3' -61.5 NC_002512.2 + 127869 0.68 0.67372
Target:  5'- uGGGCGCgCGGGAcggguguuuUCCG-ACCCUCGAa -3'
miRNA:   3'- cUCCGUG-GCCCUu--------GGGCuUGGGGGCU- -5'
8994 3' -61.5 NC_002512.2 + 42195 0.68 0.67372
Target:  5'- cGGGGguUCGGGuuCCCGGuGCCUCCGc -3'
miRNA:   3'- -CUCCguGGCCCuuGGGCU-UGGGGGCu -5'
8994 3' -61.5 NC_002512.2 + 84466 0.68 0.682246
Target:  5'- --aGCACCGcggcGGAcgagccgaagaagACCCGGACCCCgGAc -3'
miRNA:   3'- cucCGUGGC----CCU-------------UGGGCUUGGGGgCU- -5'
8994 3' -61.5 NC_002512.2 + 102955 0.68 0.682246
Target:  5'- cGGGGCGCgggCGGGuaucgccAGCCCGGccucCCCCCGc -3'
miRNA:   3'- -CUCCGUG---GCCC-------UUGGGCUu---GGGGGCu -5'
8994 3' -61.5 NC_002512.2 + 29562 0.68 0.683192
Target:  5'- gGAGGaCGCCggcGGGAAgCCGc-UCCCCGAg -3'
miRNA:   3'- -CUCC-GUGG---CCCUUgGGCuuGGGGGCU- -5'
8994 3' -61.5 NC_002512.2 + 79686 0.68 0.683192
Target:  5'- -cGGCcuCCGGGuuCCCGGAUCCCUc- -3'
miRNA:   3'- cuCCGu-GGCCCuuGGGCUUGGGGGcu -5'
8994 3' -61.5 NC_002512.2 + 73393 0.68 0.686972
Target:  5'- cAGGcCGCCGuGuccgcccagcccgccGAGCCCGccGCCCCCGAg -3'
miRNA:   3'- cUCC-GUGGC-C---------------CUUGGGCu-UGGGGGCU- -5'
8994 3' -61.5 NC_002512.2 + 108512 0.68 0.686027
Target:  5'- cGGGCccggcgcccgaccgGCCGGGGACCCGAcggcggagaagguCCgCCGGg -3'
miRNA:   3'- cUCCG--------------UGGCCCUUGGGCUu------------GGgGGCU- -5'
8994 3' -61.5 NC_002512.2 + 136086 0.68 0.645153
Target:  5'- gGGGGCcgGCUGcGGAcgcccgucACCCGAuccGCUCCCGAc -3'
miRNA:   3'- -CUCCG--UGGC-CCU--------UGGGCU---UGGGGGCU- -5'
8994 3' -61.5 NC_002512.2 + 127917 0.68 0.693569
Target:  5'- gGAGGCGagggcggaucgguaGGGuACCCGAGgCCCCGu -3'
miRNA:   3'- -CUCCGUgg------------CCCuUGGGCUUgGGGGCu -5'
8994 3' -61.5 NC_002512.2 + 200221 0.68 0.683192
Target:  5'- cGAGGaGCC-GGAGCCCGAggaGCCCgaCGAc -3'
miRNA:   3'- -CUCCgUGGcCCUUGGGCU---UGGGg-GCU- -5'
8994 3' -61.5 NC_002512.2 + 194828 0.68 0.683192
Target:  5'- -cGGCACCGuGGugcugucccGGCCCGugcggaCCCCGAu -3'
miRNA:   3'- cuCCGUGGC-CC---------UUGGGCuug---GGGGCU- -5'
8994 3' -61.5 NC_002512.2 + 155489 0.68 0.683192
Target:  5'- -cGGCACCG----UCCGGACCCCCa- -3'
miRNA:   3'- cuCCGUGGCccuuGGGCUUGGGGGcu -5'
8994 3' -61.5 NC_002512.2 + 149050 0.68 0.683192
Target:  5'- cGAGGCucGCCuacGGGGCCCGcuCCgCCGAc -3'
miRNA:   3'- -CUCCG--UGGc--CCUUGGGCuuGGgGGCU- -5'
8994 3' -61.5 NC_002512.2 + 137895 0.68 0.683192
Target:  5'- -cGGCgACgCGGGAGaCCCGGacgcgGCCCuCCGGa -3'
miRNA:   3'- cuCCG-UG-GCCCUU-GGGCU-----UGGG-GGCU- -5'
8994 3' -61.5 NC_002512.2 + 101665 0.68 0.677513
Target:  5'- gGGGGCACCuGGAGacagucguccccgucCCCGGuCCCgCCGGc -3'
miRNA:   3'- -CUCCGUGGcCCUU---------------GGGCUuGGG-GGCU- -5'
8994 3' -61.5 NC_002512.2 + 69120 0.68 0.643243
Target:  5'- -cGGCcccgcuCCGGGAccuccguGCCCGGGgccggcgccguucCCCCCGAa -3'
miRNA:   3'- cuCCGu-----GGCCCU-------UGGGCUU-------------GGGGGCU- -5'
8994 3' -61.5 NC_002512.2 + 213042 0.68 0.668022
Target:  5'- -cGGCugCGGGGgaucgagaucgcccuGCCC-AGCCCCgCGGg -3'
miRNA:   3'- cuCCGugGCCCU---------------UGGGcUUGGGG-GCU- -5'
8994 3' -61.5 NC_002512.2 + 227705 0.68 0.664218
Target:  5'- -cGGCGgCGGGGGCgCGGuacggUCCCCGAc -3'
miRNA:   3'- cuCCGUgGCCCUUGgGCUu----GGGGGCU- -5'
8994 3' -61.5 NC_002512.2 + 62308 0.68 0.645153
Target:  5'- aGAGGCggcggaugACCGGGAagaAgCCGAcgggcACCCCCu- -3'
miRNA:   3'- -CUCCG--------UGGCCCU---UgGGCU-----UGGGGGcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.