miRNA display CGI


Results 41 - 60 of 275 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8994 3' -61.5 NC_002512.2 + 110307 0.72 0.451514
Target:  5'- -uGGCGCgaGGGGACCCGccgGGCUCCCGc -3'
miRNA:   3'- cuCCGUGg-CCCUUGGGC---UUGGGGGCu -5'
8994 3' -61.5 NC_002512.2 + 190423 0.72 0.459247
Target:  5'- gGGGGCugCGGGAGCgggccgucaccgaCCGGgacgugaccuccACCCCCGu -3'
miRNA:   3'- -CUCCGugGCCCUUG-------------GGCU------------UGGGGGCu -5'
8994 3' -61.5 NC_002512.2 + 164434 0.72 0.468794
Target:  5'- cAGGuCGCCGGGAAgCCGcucggcGCCCUCGGc -3'
miRNA:   3'- cUCC-GUGGCCCUUgGGCu-----UGGGGGCU- -5'
8994 3' -61.5 NC_002512.2 + 12410 0.72 0.468794
Target:  5'- -cGGCGCCGGGAuCgCGAGCUCgCCGc -3'
miRNA:   3'- cuCCGUGGCCCUuGgGCUUGGG-GGCu -5'
8994 3' -61.5 NC_002512.2 + 21186 0.72 0.468794
Target:  5'- -cGGCGagccCCGGGuACCCGuccagggacagcGGCCCCCGGg -3'
miRNA:   3'- cuCCGU----GGCCCuUGGGC------------UUGGGGGCU- -5'
8994 3' -61.5 NC_002512.2 + 81432 0.72 0.468794
Target:  5'- -cGGCuccgucccGCgGGGGGCCCG-GCCCCCGu -3'
miRNA:   3'- cuCCG--------UGgCCCUUGGGCuUGGGGGCu -5'
8994 3' -61.5 NC_002512.2 + 92644 0.71 0.474922
Target:  5'- -cGGCGCCGGG-ACCCGcgcggauccgggacGGCCgCCCGc -3'
miRNA:   3'- cuCCGUGGCCCuUGGGC--------------UUGG-GGGCu -5'
8994 3' -61.5 NC_002512.2 + 130477 0.71 0.474922
Target:  5'- gGGGGCGgagacgaagccgccCCGGGAGUCCGGACCCCg-- -3'
miRNA:   3'- -CUCCGU--------------GGCCCUUGGGCUUGGGGgcu -5'
8994 3' -61.5 NC_002512.2 + 97974 0.71 0.477561
Target:  5'- aGGGGCGCCGGuacGCCCcggGGACCUUCGAc -3'
miRNA:   3'- -CUCCGUGGCCcu-UGGG---CUUGGGGGCU- -5'
8994 3' -61.5 NC_002512.2 + 38349 0.71 0.477561
Target:  5'- cGGGGaucCGCCGGGucGCCCGA-CCCCaCGGc -3'
miRNA:   3'- -CUCC---GUGGCCCu-UGGGCUuGGGG-GCU- -5'
8994 3' -61.5 NC_002512.2 + 145375 0.71 0.477561
Target:  5'- aGGGCuacgACUGGGAGCCCGAcgcgGCgUCCGGg -3'
miRNA:   3'- cUCCG----UGGCCCUUGGGCU----UGgGGGCU- -5'
8994 3' -61.5 NC_002512.2 + 195860 0.71 0.477561
Target:  5'- -cGGCGCuCGcGGAACCUGAggACCUCCGu -3'
miRNA:   3'- cuCCGUG-GC-CCUUGGGCU--UGGGGGCu -5'
8994 3' -61.5 NC_002512.2 + 7983 0.71 0.477561
Target:  5'- -cGGCGCUGGc-GCCCG-AUCCCCGAu -3'
miRNA:   3'- cuCCGUGGCCcuUGGGCuUGGGGGCU- -5'
8994 3' -61.5 NC_002512.2 + 75923 0.71 0.495331
Target:  5'- -cGGCGCCGccGGAcCCCGAAgaacccgacgUCCCCGAa -3'
miRNA:   3'- cuCCGUGGC--CCUuGGGCUU----------GGGGGCU- -5'
8994 3' -61.5 NC_002512.2 + 94661 0.71 0.495331
Target:  5'- cGAGGCGgcCCGGG-GCCgGGGggcCCCCCGGc -3'
miRNA:   3'- -CUCCGU--GGCCCuUGGgCUU---GGGGGCU- -5'
8994 3' -61.5 NC_002512.2 + 225409 0.71 0.498922
Target:  5'- -cGGCGCCGGGGucggggucggguuggGgCCGAcgccgACCCCCGc -3'
miRNA:   3'- cuCCGUGGCCCU---------------UgGGCU-----UGGGGGCu -5'
8994 3' -61.5 NC_002512.2 + 3885 0.71 0.503426
Target:  5'- gGAGucaGCACCGGcguCCCGGuccccuuGCCCCCGAg -3'
miRNA:   3'- -CUC---CGUGGCCcuuGGGCU-------UGGGGGCU- -5'
8994 3' -61.5 NC_002512.2 + 53424 0.71 0.504328
Target:  5'- cAGGagaagagaGCCGcGGAACCCGAcaCCCCGAc -3'
miRNA:   3'- cUCCg-------UGGC-CCUUGGGCUugGGGGCU- -5'
8994 3' -61.5 NC_002512.2 + 133493 0.71 0.511577
Target:  5'- cGAGGcCGCCGGuGAGucCCCGGuuuccucuccucCCCCCGAg -3'
miRNA:   3'- -CUCC-GUGGCC-CUU--GGGCUu-----------GGGGGCU- -5'
8994 3' -61.5 NC_002512.2 + 126280 0.71 0.513396
Target:  5'- -cGGUACCGGGAGgCCGucgacaccGCCCUCGu -3'
miRNA:   3'- cuCCGUGGCCCUUgGGCu-------UGGGGGCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.