miRNA display CGI


Results 81 - 100 of 275 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8994 3' -61.5 NC_002512.2 + 5633 0.7 0.550284
Target:  5'- cGGGCGUCGGGcgccGACCCGccuCCCCCGc -3'
miRNA:   3'- cUCCGUGGCCC----UUGGGCuu-GGGGGCu -5'
8994 3' -61.5 NC_002512.2 + 118780 0.7 0.558701
Target:  5'- -cGGCGCCuccgccgccgggcGGGAGCUgUGGGCCCCCGu -3'
miRNA:   3'- cuCCGUGG-------------CCCUUGG-GCUUGGGGGCu -5'
8994 3' -61.5 NC_002512.2 + 226400 0.7 0.559639
Target:  5'- -cGGCGCCGGG-ACCCGucGCgUCCGc -3'
miRNA:   3'- cuCCGUGGCCCuUGGGCu-UGgGGGCu -5'
8994 3' -61.5 NC_002512.2 + 107283 0.7 0.559639
Target:  5'- cGAGGcCGCCGagacGAACCUGAucUCCCCGAu -3'
miRNA:   3'- -CUCC-GUGGCc---CUUGGGCUu-GGGGGCU- -5'
8994 3' -61.5 NC_002512.2 + 101289 0.7 0.563393
Target:  5'- cAGGUACCcGGAcguCCCGGccucucgcagggucgGCCCCCGGa -3'
miRNA:   3'- cUCCGUGGcCCUu--GGGCU---------------UGGGGGCU- -5'
8994 3' -61.5 NC_002512.2 + 95709 0.7 0.568096
Target:  5'- cGGGGgGCCGGGAGgggaagacggcucCCCGucCCCgCCGGc -3'
miRNA:   3'- -CUCCgUGGCCCUU-------------GGGCuuGGG-GGCU- -5'
8994 3' -61.5 NC_002512.2 + 97415 0.7 0.569038
Target:  5'- gGAGGC-CgGGGAGagacgcgcgcucCCCGGACCCgCCGc -3'
miRNA:   3'- -CUCCGuGgCCCUU------------GGGCUUGGG-GGCu -5'
8994 3' -61.5 NC_002512.2 + 106380 0.7 0.569038
Target:  5'- cGAGGaaggACCGGGGGCCgagcacccccUGGACCCgCGAg -3'
miRNA:   3'- -CUCCg---UGGCCCUUGG----------GCUUGGGgGCU- -5'
8994 3' -61.5 NC_002512.2 + 113418 0.7 0.569038
Target:  5'- uGGGcCGCCGGGAucaccGCCCcg-UCCCCGAg -3'
miRNA:   3'- cUCC-GUGGCCCU-----UGGGcuuGGGGGCU- -5'
8994 3' -61.5 NC_002512.2 + 22999 0.7 0.572808
Target:  5'- -cGGCGCUGGuGAccuacccgucggcgaGCUCGGcgccGCCCCCGAa -3'
miRNA:   3'- cuCCGUGGCC-CU---------------UGGGCU----UGGGGGCU- -5'
8994 3' -61.5 NC_002512.2 + 4950 0.7 0.578475
Target:  5'- cGAGcGaCACCGGcacGGACCCGGuCCCCgCGAc -3'
miRNA:   3'- -CUC-C-GUGGCC---CUUGGGCUuGGGG-GCU- -5'
8994 3' -61.5 NC_002512.2 + 149440 0.7 0.578475
Target:  5'- cGGGCGCgGGGGgagaggaaggggACCCGGgacGCCgCCGAc -3'
miRNA:   3'- cUCCGUGgCCCU------------UGGGCU---UGGgGGCU- -5'
8994 3' -61.5 NC_002512.2 + 103388 0.69 0.587946
Target:  5'- aGAGGCucgcgcccaacGCCGGGGAUCCGGGCgaCgCGAc -3'
miRNA:   3'- -CUCCG-----------UGGCCCUUGGGCUUGg-GgGCU- -5'
8994 3' -61.5 NC_002512.2 + 111233 0.69 0.587946
Target:  5'- cGGGCgGCCGGGcGCCCGGAgCgUCGGg -3'
miRNA:   3'- cUCCG-UGGCCCuUGGGCUUgGgGGCU- -5'
8994 3' -61.5 NC_002512.2 + 149010 0.69 0.587946
Target:  5'- gGGGGcCGCCGcGGAccGCCCGAcaccgaGCCCCgCGu -3'
miRNA:   3'- -CUCC-GUGGC-CCU--UGGGCU------UGGGG-GCu -5'
8994 3' -61.5 NC_002512.2 + 210500 0.69 0.591743
Target:  5'- cGAGGCGa-GGGcccGACgcgagcgcgaggccgCCGAGCCCCCGAc -3'
miRNA:   3'- -CUCCGUggCCC---UUG---------------GGCUUGGGGGCU- -5'
8994 3' -61.5 NC_002512.2 + 194538 0.69 0.597445
Target:  5'- gGAGGC-CCGGGAcaaCCGuAACCgcCCCGGg -3'
miRNA:   3'- -CUCCGuGGCCCUug-GGC-UUGG--GGGCU- -5'
8994 3' -61.5 NC_002512.2 + 173978 0.69 0.597445
Target:  5'- gGAGGCGCaCGGGAgaugGCUCcAGCCCCUc- -3'
miRNA:   3'- -CUCCGUG-GCCCU----UGGGcUUGGGGGcu -5'
8994 3' -61.5 NC_002512.2 + 95249 0.69 0.597445
Target:  5'- gGGGGCGuCCGGaGGGCCgCGcGGCUCCUGAa -3'
miRNA:   3'- -CUCCGU-GGCC-CUUGG-GC-UUGGGGGCU- -5'
8994 3' -61.5 NC_002512.2 + 81051 0.69 0.597445
Target:  5'- -cGGCAgCGGuGcGCCCGGaccGCCCCCa- -3'
miRNA:   3'- cuCCGUgGCC-CuUGGGCU---UGGGGGcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.