miRNA display CGI


Results 101 - 120 of 275 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8994 3' -61.5 NC_002512.2 + 13457 0.69 0.606966
Target:  5'- aGGGCGgCGGcGAGCCUGGcguCCCCgGAc -3'
miRNA:   3'- cUCCGUgGCC-CUUGGGCUu--GGGGgCU- -5'
8994 3' -61.5 NC_002512.2 + 133584 0.69 0.606966
Target:  5'- ---cCGCCGGGGACCCGAgcgggccgGCCUCCu- -3'
miRNA:   3'- cuccGUGGCCCUUGGGCU--------UGGGGGcu -5'
8994 3' -61.5 NC_002512.2 + 11880 0.69 0.616503
Target:  5'- cGAGGUGgUGGacauCCCGAuggaGCCCCCGAa -3'
miRNA:   3'- -CUCCGUgGCCcuu-GGGCU----UGGGGGCU- -5'
8994 3' -61.5 NC_002512.2 + 88657 0.69 0.616503
Target:  5'- uAGGUgaugaGCgGGGAccGCCCGAACccgCCCCGGc -3'
miRNA:   3'- cUCCG-----UGgCCCU--UGGGCUUG---GGGGCU- -5'
8994 3' -61.5 NC_002512.2 + 148442 0.69 0.616503
Target:  5'- gGAGGa--CGGGGGCCgGGcCCCCCGc -3'
miRNA:   3'- -CUCCgugGCCCUUGGgCUuGGGGGCu -5'
8994 3' -61.5 NC_002512.2 + 102905 0.69 0.616503
Target:  5'- --cGCGCUGGGAgaggACCgCGGACCCCUa- -3'
miRNA:   3'- cucCGUGGCCCU----UGG-GCUUGGGGGcu -5'
8994 3' -61.5 NC_002512.2 + 101623 0.69 0.616503
Target:  5'- -cGGCGCCGGG-ACgCGAgucGCCgCUCGAg -3'
miRNA:   3'- cuCCGUGGCCCuUGgGCU---UGG-GGGCU- -5'
8994 3' -61.5 NC_002512.2 + 12277 0.69 0.616503
Target:  5'- -uGGCGCCGcccGAGuCgCCGAcgACCCCCGAg -3'
miRNA:   3'- cuCCGUGGCc--CUU-G-GGCU--UGGGGGCU- -5'
8994 3' -61.5 NC_002512.2 + 139411 0.69 0.616503
Target:  5'- cGAGGaCGCCccggugaucGGGGACCCGcAGCUggCCCGGc -3'
miRNA:   3'- -CUCC-GUGG---------CCCUUGGGC-UUGG--GGGCU- -5'
8994 3' -61.5 NC_002512.2 + 75345 0.69 0.625096
Target:  5'- cGGGCGCuCcGGAuuggucgGCCCGAACCgCCGGc -3'
miRNA:   3'- cUCCGUG-GcCCU-------UGGGCUUGGgGGCU- -5'
8994 3' -61.5 NC_002512.2 + 130231 0.69 0.626051
Target:  5'- cGAGcUGCCGGGGAUcggcucgggcgCCGGGCCCuCCGAg -3'
miRNA:   3'- -CUCcGUGGCCCUUG-----------GGCUUGGG-GGCU- -5'
8994 3' -61.5 NC_002512.2 + 133340 0.69 0.626051
Target:  5'- -uGGCGuCCGGGAucCCCGG--CCCCGGc -3'
miRNA:   3'- cuCCGU-GGCCCUu-GGGCUugGGGGCU- -5'
8994 3' -61.5 NC_002512.2 + 214778 0.69 0.626051
Target:  5'- -cGGCGCCGGucGCCCuccGggUCCCCu- -3'
miRNA:   3'- cuCCGUGGCCcuUGGG---CuuGGGGGcu -5'
8994 3' -61.5 NC_002512.2 + 49639 0.69 0.626051
Target:  5'- cGGGCgaGCCGGGAccAgUCGGACCCCaCGu -3'
miRNA:   3'- cUCCG--UGGCCCU--UgGGCUUGGGG-GCu -5'
8994 3' -61.5 NC_002512.2 + 159707 0.69 0.632737
Target:  5'- cGAGGCACCGGGAccgggagagguacuACCggCGGAUCCUg-- -3'
miRNA:   3'- -CUCCGUGGCCCU--------------UGG--GCUUGGGGgcu -5'
8994 3' -61.5 NC_002512.2 + 225808 0.69 0.635603
Target:  5'- cGGGCgGCCGGGuGGCCUGGGaCCUCGAg -3'
miRNA:   3'- cUCCG-UGGCCC-UUGGGCUUgGGGGCU- -5'
8994 3' -61.5 NC_002512.2 + 93318 0.69 0.635603
Target:  5'- --cGCACCGGGcuGACCCGGAUCaUCCGc -3'
miRNA:   3'- cucCGUGGCCC--UUGGGCUUGG-GGGCu -5'
8994 3' -61.5 NC_002512.2 + 69120 0.68 0.643243
Target:  5'- -cGGCcccgcuCCGGGAccuccguGCCCGGGgccggcgccguucCCCCCGAa -3'
miRNA:   3'- cuCCGu-----GGCCCU-------UGGGCUU-------------GGGGGCU- -5'
8994 3' -61.5 NC_002512.2 + 99645 0.68 0.645153
Target:  5'- aGGGC-CCGGc-GCCCGAGCcgauCCCCGGc -3'
miRNA:   3'- cUCCGuGGCCcuUGGGCUUG----GGGGCU- -5'
8994 3' -61.5 NC_002512.2 + 136086 0.68 0.645153
Target:  5'- gGGGGCcgGCUGcGGAcgcccgucACCCGAuccGCUCCCGAc -3'
miRNA:   3'- -CUCCG--UGGC-CCU--------UGGGCU---UGGGGGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.