miRNA display CGI


Results 121 - 140 of 275 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8994 3' -61.5 NC_002512.2 + 136086 0.68 0.645153
Target:  5'- gGGGGCcgGCUGcGGAcgcccgucACCCGAuccGCUCCCGAc -3'
miRNA:   3'- -CUCCG--UGGC-CCU--------UGGGCU---UGGGGGCU- -5'
8994 3' -61.5 NC_002512.2 + 1917 0.68 0.64897
Target:  5'- -cGGCGCCGGG-GCCCuccucuccggcuCCCCCGc -3'
miRNA:   3'- cuCCGUGGCCCuUGGGcuu---------GGGGGCu -5'
8994 3' -61.5 NC_002512.2 + 8260 0.68 0.654693
Target:  5'- aGGGcCGCCGGGugGACCCGcuCCCUCc- -3'
miRNA:   3'- cUCC-GUGGCCC--UUGGGCuuGGGGGcu -5'
8994 3' -61.5 NC_002512.2 + 16367 0.68 0.654693
Target:  5'- aGGGCACCcc-GACCCGGacgacGCCCUCGAa -3'
miRNA:   3'- cUCCGUGGcccUUGGGCU-----UGGGGGCU- -5'
8994 3' -61.5 NC_002512.2 + 112563 0.68 0.654693
Target:  5'- -cGGCGCCagcGGGAACCCGccguCCgUCCGGu -3'
miRNA:   3'- cuCCGUGG---CCCUUGGGCuu--GG-GGGCU- -5'
8994 3' -61.5 NC_002512.2 + 96547 0.68 0.664218
Target:  5'- -cGGgGCCGGGGAuCCCGGACgCCa-- -3'
miRNA:   3'- cuCCgUGGCCCUU-GGGCUUGgGGgcu -5'
8994 3' -61.5 NC_002512.2 + 219624 0.68 0.664218
Target:  5'- cGGGCAUCGGGGuguCCCGcuUCUUCGAg -3'
miRNA:   3'- cUCCGUGGCCCUu--GGGCuuGGGGGCU- -5'
8994 3' -61.5 NC_002512.2 + 97774 0.68 0.664218
Target:  5'- -cGGCcuACCGGGcGGCCCucGAGCCCCgGu -3'
miRNA:   3'- cuCCG--UGGCCC-UUGGG--CUUGGGGgCu -5'
8994 3' -61.5 NC_002512.2 + 60340 0.68 0.664218
Target:  5'- aAGGCcacgccGCCGGGcAGCCgGGACCCguUCGAg -3'
miRNA:   3'- cUCCG------UGGCCC-UUGGgCUUGGG--GGCU- -5'
8994 3' -61.5 NC_002512.2 + 121342 0.68 0.664218
Target:  5'- aAGGC-CCGGcGGACCuucuccgccguCGggUCCCCGGc -3'
miRNA:   3'- cUCCGuGGCC-CUUGG-----------GCuuGGGGGCU- -5'
8994 3' -61.5 NC_002512.2 + 227705 0.68 0.664218
Target:  5'- -cGGCGgCGGGGGCgCGGuacggUCCCCGAc -3'
miRNA:   3'- cuCCGUgGCCCUUGgGCUu----GGGGGCU- -5'
8994 3' -61.5 NC_002512.2 + 213042 0.68 0.668022
Target:  5'- -cGGCugCGGGGgaucgagaucgcccuGCCC-AGCCCCgCGGg -3'
miRNA:   3'- cuCCGugGCCCU---------------UGGGcUUGGGG-GCU- -5'
8994 3' -61.5 NC_002512.2 + 127869 0.68 0.67372
Target:  5'- uGGGCGCgCGGGAcggguguuuUCCG-ACCCUCGAa -3'
miRNA:   3'- cUCCGUG-GCCCUu--------GGGCuUGGGGGCU- -5'
8994 3' -61.5 NC_002512.2 + 3503 0.68 0.67372
Target:  5'- -cGGCGCCGucgucGGcccuccACCCGAGCCCgCGGg -3'
miRNA:   3'- cuCCGUGGC-----CCu-----UGGGCUUGGGgGCU- -5'
8994 3' -61.5 NC_002512.2 + 144283 0.68 0.67372
Target:  5'- aGAGGCGgCGGaGGcACCCGAACgcggacgcgcucUCCCGGc -3'
miRNA:   3'- -CUCCGUgGCC-CU-UGGGCUUG------------GGGGCU- -5'
8994 3' -61.5 NC_002512.2 + 42195 0.68 0.67372
Target:  5'- cGGGGguUCGGGuuCCCGGuGCCUCCGc -3'
miRNA:   3'- -CUCCguGGCCCuuGGGCU-UGGGGGCu -5'
8994 3' -61.5 NC_002512.2 + 101665 0.68 0.677513
Target:  5'- gGGGGCACCuGGAGacagucguccccgucCCCGGuCCCgCCGGc -3'
miRNA:   3'- -CUCCGUGGcCCUU---------------GGGCUuGGG-GGCU- -5'
8994 3' -61.5 NC_002512.2 + 97281 0.68 0.677513
Target:  5'- --cGCAUCGGGGAggccgagcgucugcuCgCCGAACCCCUGGc -3'
miRNA:   3'- cucCGUGGCCCUU---------------G-GGCUUGGGGGCU- -5'
8994 3' -61.5 NC_002512.2 + 84466 0.68 0.682246
Target:  5'- --aGCACCGcggcGGAcgagccgaagaagACCCGGACCCCgGAc -3'
miRNA:   3'- cucCGUGGC----CCU-------------UGGGCUUGGGGgCU- -5'
8994 3' -61.5 NC_002512.2 + 102955 0.68 0.682246
Target:  5'- cGGGGCGCgggCGGGuaucgccAGCCCGGccucCCCCCGc -3'
miRNA:   3'- -CUCCGUG---GCCC-------UUGGGCUu---GGGGGCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.