miRNA display CGI


Results 61 - 80 of 275 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8994 3' -61.5 NC_002512.2 + 149132 0.66 0.765911
Target:  5'- cGAGGacccCCGGGAcCCgGGACCgCCGc -3'
miRNA:   3'- -CUCCgu--GGCCCUuGGgCUUGGgGGCu -5'
8994 3' -61.5 NC_002512.2 + 126827 0.66 0.765911
Target:  5'- cGAGGUGCCGuuc-CCCGcgcuccuGCCCCCGGu -3'
miRNA:   3'- -CUCCGUGGCccuuGGGCu------UGGGGGCU- -5'
8994 3' -61.5 NC_002512.2 + 5505 0.66 0.765911
Target:  5'- --cGCGCCGGGGuCgCGAGgUCCCGGa -3'
miRNA:   3'- cucCGUGGCCCUuGgGCUUgGGGGCU- -5'
8994 3' -61.5 NC_002512.2 + 83030 0.66 0.765911
Target:  5'- -uGGCcCCGcGcGAGCUCGAGCaCCCUGGg -3'
miRNA:   3'- cuCCGuGGC-C-CUUGGGCUUG-GGGGCU- -5'
8994 3' -61.5 NC_002512.2 + 55625 0.66 0.765911
Target:  5'- cGAGaCcCCGGG-ACCCGGACCCgggCGAg -3'
miRNA:   3'- -CUCcGuGGCCCuUGGGCUUGGGg--GCU- -5'
8994 3' -61.5 NC_002512.2 + 7452 0.66 0.765911
Target:  5'- -cGGC-CCGGGGgaaGCCgCGGcgcggcugccgGCCCCCGc -3'
miRNA:   3'- cuCCGuGGCCCU---UGG-GCU-----------UGGGGGCu -5'
8994 3' -61.5 NC_002512.2 + 108592 0.66 0.765028
Target:  5'- gGGGGCcCCGGGGagcggcgGCCgCGGGCCcguCCCGu -3'
miRNA:   3'- -CUCCGuGGCCCU-------UGG-GCUUGG---GGGCu -5'
8994 3' -61.5 NC_002512.2 + 121034 0.66 0.760597
Target:  5'- cGGGCgagcgcgaccucuggGCCGGGuACCC--GCCgCCCGAg -3'
miRNA:   3'- cUCCG---------------UGGCCCuUGGGcuUGG-GGGCU- -5'
8994 3' -61.5 NC_002512.2 + 2169 0.66 0.757035
Target:  5'- cGAGGagUCGGGGACcguaCCGcGCCCCCGc -3'
miRNA:   3'- -CUCCguGGCCCUUG----GGCuUGGGGGCu -5'
8994 3' -61.5 NC_002512.2 + 119565 0.66 0.757035
Target:  5'- cGGGCGgacCgCGGGAGCCCggcGggUCCCCu- -3'
miRNA:   3'- cUCCGU---G-GCCCUUGGG---CuuGGGGGcu -5'
8994 3' -61.5 NC_002512.2 + 106746 0.66 0.757035
Target:  5'- -cGGCGCCGccgcCCCGu-CCCCCGGg -3'
miRNA:   3'- cuCCGUGGCccuuGGGCuuGGGGGCU- -5'
8994 3' -61.5 NC_002512.2 + 168159 0.66 0.757035
Target:  5'- gGGGGCGgagaGGGGACgCG-GCCCCCGc -3'
miRNA:   3'- -CUCCGUgg--CCCUUGgGCuUGGGGGCu -5'
8994 3' -61.5 NC_002512.2 + 45937 0.66 0.757035
Target:  5'- cGAGcGCGcgucCCGGGAGCagaaccagCCGAGCCgCUGAa -3'
miRNA:   3'- -CUC-CGU----GGCCCUUG--------GGCUUGGgGGCU- -5'
8994 3' -61.5 NC_002512.2 + 70507 0.66 0.756142
Target:  5'- -cGaCGCCGcGGGACCCGcgaauggGACgCCCCGAc -3'
miRNA:   3'- cuCcGUGGC-CCUUGGGC-------UUG-GGGGCU- -5'
8994 3' -61.5 NC_002512.2 + 101936 0.67 0.751662
Target:  5'- aAGGCGgCGGGcaaguccaagcugguGGCCCGcgGGCCCgCCGGc -3'
miRNA:   3'- cUCCGUgGCCC---------------UUGGGC--UUGGG-GGCU- -5'
8994 3' -61.5 NC_002512.2 + 106707 0.67 0.748062
Target:  5'- uGGGGCucuCCGGGAugaCCGcGCUCCUGu -3'
miRNA:   3'- -CUCCGu--GGCCCUug-GGCuUGGGGGCu -5'
8994 3' -61.5 NC_002512.2 + 226871 0.67 0.748062
Target:  5'- gGAGGC-CCGGGAGgCCaGGAaggCCCGGg -3'
miRNA:   3'- -CUCCGuGGCCCUUgGG-CUUgg-GGGCU- -5'
8994 3' -61.5 NC_002512.2 + 39937 0.67 0.748062
Target:  5'- aGAGGU-CCGGGAAgaCCGAgggggagcagucGCCgCCGAg -3'
miRNA:   3'- -CUCCGuGGCCCUUg-GGCU------------UGGgGGCU- -5'
8994 3' -61.5 NC_002512.2 + 65624 0.67 0.748062
Target:  5'- cGAGGCgAUCG---ACCCGAcgGCCCCCGc -3'
miRNA:   3'- -CUCCG-UGGCccuUGGGCU--UGGGGGCu -5'
8994 3' -61.5 NC_002512.2 + 229227 0.67 0.748062
Target:  5'- cAGGCAgCGGaGAGCCCaacACCCacaCCGAg -3'
miRNA:   3'- cUCCGUgGCC-CUUGGGcu-UGGG---GGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.