Results 101 - 120 of 275 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8994 | 3' | -61.5 | NC_002512.2 | + | 76114 | 0.67 | 0.735353 |
Target: 5'- gGGGGCGCCGGGGugGugucgaugacgucgUCCGAuucgaccACCCCCc- -3' miRNA: 3'- -CUCCGUGGCCCU--U--------------GGGCU-------UGGGGGcu -5' |
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8994 | 3' | -61.5 | NC_002512.2 | + | 219710 | 0.67 | 0.729859 |
Target: 5'- -cGGCGCUcGGGGCgCGAgaggcgGCCCCCGu -3' miRNA: 3'- cuCCGUGGcCCUUGgGCU------UGGGGGCu -5' |
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8994 | 3' | -61.5 | NC_002512.2 | + | 162127 | 0.67 | 0.729859 |
Target: 5'- -cGGCGCCGGaGAcgACCCcGGCUCgCGAg -3' miRNA: 3'- cuCCGUGGCC-CU--UGGGcUUGGGgGCU- -5' |
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8994 | 3' | -61.5 | NC_002512.2 | + | 107009 | 0.67 | 0.729859 |
Target: 5'- cGGGGUcgGCCGaGAGCCgGGcgcGCUCCCGAc -3' miRNA: 3'- -CUCCG--UGGCcCUUGGgCU---UGGGGGCU- -5' |
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8994 | 3' | -61.5 | NC_002512.2 | + | 79941 | 0.67 | 0.729859 |
Target: 5'- cGAGGCgGCgCGGGggUCCGccuGCCgUCGGa -3' miRNA: 3'- -CUCCG-UG-GCCCuuGGGCu--UGGgGGCU- -5' |
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8994 | 3' | -61.5 | NC_002512.2 | + | 124781 | 0.67 | 0.729859 |
Target: 5'- aGGGCuGCCGGG-ACCCGGggagACacgucgaCCCGAc -3' miRNA: 3'- cUCCG-UGGCCCuUGGGCU----UGg------GGGCU- -5' |
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8994 | 3' | -61.5 | NC_002512.2 | + | 208890 | 0.67 | 0.72894 |
Target: 5'- gGAGGgGCCGGGAAucCCCGcgcgggaGGCUCCUa- -3' miRNA: 3'- -CUCCgUGGCCCUU--GGGC-------UUGGGGGcu -5' |
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8994 | 3' | -61.5 | NC_002512.2 | + | 200103 | 0.67 | 0.727102 |
Target: 5'- cGGGGuCGCCGGGGuacuucagcaucGCcgucgcgucgaucgCCGGGCCCCCu- -3' miRNA: 3'- -CUCC-GUGGCCCU------------UG--------------GGCUUGGGGGcu -5' |
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8994 | 3' | -61.5 | NC_002512.2 | + | 35328 | 0.67 | 0.726181 |
Target: 5'- aGGGGCAcggccuucCCGGGGcgguuacgguuguCCCGGGCCUCCa- -3' miRNA: 3'- -CUCCGU--------GGCCCUu------------GGGCUUGGGGGcu -5' |
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8994 | 3' | -61.5 | NC_002512.2 | + | 52765 | 0.67 | 0.720643 |
Target: 5'- cGGGCccuGCUGGcGcACCCGGACCUCCu- -3' miRNA: 3'- cUCCG---UGGCC-CuUGGGCUUGGGGGcu -5' |
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8994 | 3' | -61.5 | NC_002512.2 | + | 134871 | 0.67 | 0.720643 |
Target: 5'- cGGGCGacgccgUCGGGGACCUGGACUgCUCGGa -3' miRNA: 3'- cUCCGU------GGCCCUUGGGCUUGG-GGGCU- -5' |
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8994 | 3' | -61.5 | NC_002512.2 | + | 220132 | 0.67 | 0.711361 |
Target: 5'- cGGGGCGgCGGGuccgGCuCCGccGCCCCCa- -3' miRNA: 3'- -CUCCGUgGCCCu---UG-GGCu-UGGGGGcu -5' |
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8994 | 3' | -61.5 | NC_002512.2 | + | 107370 | 0.67 | 0.711361 |
Target: 5'- cGGcGCGCCGGGGAgCCaGACCgagaCCGAg -3' miRNA: 3'- cUC-CGUGGCCCUUgGGcUUGGg---GGCU- -5' |
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8994 | 3' | -61.5 | NC_002512.2 | + | 215817 | 0.67 | 0.711361 |
Target: 5'- -cGGgGCCGGGGACUCcc-CUCCCGGc -3' miRNA: 3'- cuCCgUGGCCCUUGGGcuuGGGGGCU- -5' |
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8994 | 3' | -61.5 | NC_002512.2 | + | 135033 | 0.67 | 0.711361 |
Target: 5'- cAGG-AUCGGGGGCCCGucugacgcguacAGCCCCUGc -3' miRNA: 3'- cUCCgUGGCCCUUGGGC------------UUGGGGGCu -5' |
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8994 | 3' | -61.5 | NC_002512.2 | + | 217102 | 0.67 | 0.711361 |
Target: 5'- aGGGGCAgCGGGGGCgccgCCGAGuCCUgCGGc -3' miRNA: 3'- -CUCCGUgGCCCUUG----GGCUU-GGGgGCU- -5' |
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8994 | 3' | -61.5 | NC_002512.2 | + | 120826 | 0.67 | 0.711361 |
Target: 5'- -cGGgACgCGGcGggUCCGGucguCCCCCGAg -3' miRNA: 3'- cuCCgUG-GCC-CuuGGGCUu---GGGGGCU- -5' |
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8994 | 3' | -61.5 | NC_002512.2 | + | 135215 | 0.67 | 0.711361 |
Target: 5'- cGGGC-CgGGGGGCCCcccGGCCCCgGGc -3' miRNA: 3'- cUCCGuGgCCCUUGGGc--UUGGGGgCU- -5' |
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8994 | 3' | -61.5 | NC_002512.2 | + | 80737 | 0.67 | 0.711361 |
Target: 5'- -cGGCACCGGccccgcggcGGuCCCGggUCCCgGGg -3' miRNA: 3'- cuCCGUGGCC---------CUuGGGCuuGGGGgCU- -5' |
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8994 | 3' | -61.5 | NC_002512.2 | + | 12357 | 0.67 | 0.70202 |
Target: 5'- -cGGUucaACCaGGuGAACCgCGAcCCCCCGAg -3' miRNA: 3'- cuCCG---UGG-CC-CUUGG-GCUuGGGGGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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