miRNA display CGI


Results 41 - 60 of 275 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8994 3' -61.5 NC_002512.2 + 22999 0.7 0.572808
Target:  5'- -cGGCGCUGGuGAccuacccgucggcgaGCUCGGcgccGCCCCCGAa -3'
miRNA:   3'- cuCCGUGGCC-CU---------------UGGGCU----UGGGGGCU- -5'
8994 3' -61.5 NC_002512.2 + 23524 0.87 0.048327
Target:  5'- uGAGGCACCGGGAGCCCGAgaucauguucgccACCaaCCCGAc -3'
miRNA:   3'- -CUCCGUGGCCCUUGGGCU-------------UGG--GGGCU- -5'
8994 3' -61.5 NC_002512.2 + 24233 0.66 0.783346
Target:  5'- cGAGGCGUCGGGccCgCCGAcggcguCCCCCGc -3'
miRNA:   3'- -CUCCGUGGCCCuuG-GGCUu-----GGGGGCu -5'
8994 3' -61.5 NC_002512.2 + 25080 0.66 0.808593
Target:  5'- --cGCGCCcccGGGACgCGGACCuCCCGGg -3'
miRNA:   3'- cucCGUGGc--CCUUGgGCUUGG-GGGCU- -5'
8994 3' -61.5 NC_002512.2 + 29170 0.7 0.550284
Target:  5'- -cGGacCGCCGGGcggcAGCCCGAcGCCaCCCGAg -3'
miRNA:   3'- cuCC--GUGGCCC----UUGGGCU-UGG-GGGCU- -5'
8994 3' -61.5 NC_002512.2 + 29562 0.68 0.683192
Target:  5'- gGAGGaCGCCggcGGGAAgCCGc-UCCCCGAg -3'
miRNA:   3'- -CUCC-GUGG---CCCUUgGGCuuGGGGGCU- -5'
8994 3' -61.5 NC_002512.2 + 30597 0.66 0.791889
Target:  5'- gGAGGCcaccaACCGGaGGGCgcggauguUCGGGCCgCCCGAc -3'
miRNA:   3'- -CUCCG-----UGGCC-CUUG--------GGCUUGG-GGGCU- -5'
8994 3' -61.5 NC_002512.2 + 33690 0.75 0.29401
Target:  5'- gGAGGCucGCCaGGGACCCGGccgucGCCCCCu- -3'
miRNA:   3'- -CUCCG--UGGcCCUUGGGCU-----UGGGGGcu -5'
8994 3' -61.5 NC_002512.2 + 34041 0.66 0.808593
Target:  5'- cGA-GCGCCGGuuGCUCGAggcguGCCCCaCGAc -3'
miRNA:   3'- -CUcCGUGGCCcuUGGGCU-----UGGGG-GCU- -5'
8994 3' -61.5 NC_002512.2 + 34364 0.67 0.74716
Target:  5'- gGAGGUACCccgagaaguaguaGGcGAGCCCGAucuucacgGCCCUCa- -3'
miRNA:   3'- -CUCCGUGG-------------CC-CUUGGGCU--------UGGGGGcu -5'
8994 3' -61.5 NC_002512.2 + 35328 0.67 0.726181
Target:  5'- aGGGGCAcggccuucCCGGGGcgguuacgguuguCCCGGGCCUCCa- -3'
miRNA:   3'- -CUCCGU--------GGCCCUu------------GGGCUUGGGGGcu -5'
8994 3' -61.5 NC_002512.2 + 36908 0.66 0.808593
Target:  5'- aGAGcGCGCCGGaGGACCaagcgggaGGACCCgggggaCGAg -3'
miRNA:   3'- -CUC-CGUGGCC-CUUGGg-------CUUGGGg-----GCU- -5'
8994 3' -61.5 NC_002512.2 + 38349 0.71 0.477561
Target:  5'- cGGGGaucCGCCGGGucGCCCGA-CCCCaCGGc -3'
miRNA:   3'- -CUCC---GUGGCCCu-UGGGCUuGGGG-GCU- -5'
8994 3' -61.5 NC_002512.2 + 38657 0.78 0.214981
Target:  5'- cGGGUACCGaGGAGgCCGGggacGCCCCCGGg -3'
miRNA:   3'- cUCCGUGGC-CCUUgGGCU----UGGGGGCU- -5'
8994 3' -61.5 NC_002512.2 + 39937 0.67 0.748062
Target:  5'- aGAGGU-CCGGGAAgaCCGAgggggagcagucGCCgCCGAg -3'
miRNA:   3'- -CUCCGuGGCCCUUg-GGCU------------UGGgGGCU- -5'
8994 3' -61.5 NC_002512.2 + 42195 0.68 0.67372
Target:  5'- cGGGGguUCGGGuuCCCGGuGCCUCCGc -3'
miRNA:   3'- -CUCCguGGCCCuuGGGCU-UGGGGGCu -5'
8994 3' -61.5 NC_002512.2 + 42585 0.7 0.540977
Target:  5'- cGAGGCGagcggCGGGGcggACCCGAAgCCCgGGg -3'
miRNA:   3'- -CUCCGUg----GCCCU---UGGGCUUgGGGgCU- -5'
8994 3' -61.5 NC_002512.2 + 43649 0.66 0.783346
Target:  5'- cGAGG-ACCGGG-ACCUc-GCCCUCGGu -3'
miRNA:   3'- -CUCCgUGGCCCuUGGGcuUGGGGGCU- -5'
8994 3' -61.5 NC_002512.2 + 43908 0.66 0.783346
Target:  5'- -cGGCGCaGGGAcaGgCCGuuGCCCUCGAg -3'
miRNA:   3'- cuCCGUGgCCCU--UgGGCu-UGGGGGCU- -5'
8994 3' -61.5 NC_002512.2 + 45937 0.66 0.757035
Target:  5'- cGAGcGCGcgucCCGGGAGCagaaccagCCGAGCCgCUGAa -3'
miRNA:   3'- -CUC-CGU----GGCCCUUG--------GGCUUGGgGGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.