miRNA display CGI


Results 61 - 80 of 275 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8994 3' -61.5 NC_002512.2 + 49639 0.69 0.626051
Target:  5'- cGGGCgaGCCGGGAccAgUCGGACCCCaCGu -3'
miRNA:   3'- cUCCG--UGGCCCU--UgGGCUUGGGG-GCu -5'
8994 3' -61.5 NC_002512.2 + 51090 0.78 0.214981
Target:  5'- gGAGGUACuUGGGAACCCGGGagUCCCCGu -3'
miRNA:   3'- -CUCCGUG-GCCCUUGGGCUU--GGGGGCu -5'
8994 3' -61.5 NC_002512.2 + 52765 0.67 0.720643
Target:  5'- cGGGCccuGCUGGcGcACCCGGACCUCCu- -3'
miRNA:   3'- cUCCG---UGGCC-CuUGGGCUUGGGGGcu -5'
8994 3' -61.5 NC_002512.2 + 53257 0.77 0.240885
Target:  5'- --aGCACCGG--AUCCGAGCCCCCGAc -3'
miRNA:   3'- cucCGUGGCCcuUGGGCUUGGGGGCU- -5'
8994 3' -61.5 NC_002512.2 + 53424 0.71 0.504328
Target:  5'- cAGGagaagagaGCCGcGGAACCCGAcaCCCCGAc -3'
miRNA:   3'- cUCCg-------UGGC-CCUUGGGCUugGGGGCU- -5'
8994 3' -61.5 NC_002512.2 + 53851 0.66 0.79104
Target:  5'- -cGGCGCCGGGAGgagagggggaccgUCCGu-UCCCCa- -3'
miRNA:   3'- cuCCGUGGCCCUU-------------GGGCuuGGGGGcu -5'
8994 3' -61.5 NC_002512.2 + 55237 0.66 0.800308
Target:  5'- -cGGCACCuGGaGAACgugCCGGACgaCCCGGa -3'
miRNA:   3'- cuCCGUGG-CC-CUUG---GGCUUGg-GGGCU- -5'
8994 3' -61.5 NC_002512.2 + 55625 0.66 0.765911
Target:  5'- cGAGaCcCCGGG-ACCCGGACCCgggCGAg -3'
miRNA:   3'- -CUCcGuGGCCCuUGGGCUUGGGg--GCU- -5'
8994 3' -61.5 NC_002512.2 + 58889 0.78 0.210096
Target:  5'- aGAGGUgaaACCcGGAGCCCGAGCCCuCCGu -3'
miRNA:   3'- -CUCCG---UGGcCCUUGGGCUUGGG-GGCu -5'
8994 3' -61.5 NC_002512.2 + 60340 0.68 0.664218
Target:  5'- aAGGCcacgccGCCGGGcAGCCgGGACCCguUCGAg -3'
miRNA:   3'- cUCCG------UGGCCC-UUGGgCUUGGG--GGCU- -5'
8994 3' -61.5 NC_002512.2 + 60860 0.7 0.550284
Target:  5'- -cGGCGCCGcucgcGGAcgccGCCCGGAUCgCCGAg -3'
miRNA:   3'- cuCCGUGGC-----CCU----UGGGCUUGGgGGCU- -5'
8994 3' -61.5 NC_002512.2 + 62308 0.68 0.645153
Target:  5'- aGAGGCggcggaugACCGGGAagaAgCCGAcgggcACCCCCu- -3'
miRNA:   3'- -CUCCG--------UGGCCCU---UgGGCU-----UGGGGGcu -5'
8994 3' -61.5 NC_002512.2 + 64151 0.66 0.800308
Target:  5'- -cGGCGaaGGuGAAgcgaugcgccCCCGAcCCCCCGAc -3'
miRNA:   3'- cuCCGUggCC-CUU----------GGGCUuGGGGGCU- -5'
8994 3' -61.5 NC_002512.2 + 64385 0.67 0.739001
Target:  5'- --aGCGCCGGGAgaagcGCCCcacgcgcAGCCaCCCGAa -3'
miRNA:   3'- cucCGUGGCCCU-----UGGGc------UUGG-GGGCU- -5'
8994 3' -61.5 NC_002512.2 + 64477 0.67 0.73809
Target:  5'- uAGGCccGCCGGcccuccuGGACCaUGAGCgCCCCGAc -3'
miRNA:   3'- cUCCG--UGGCC-------CUUGG-GCUUG-GGGGCU- -5'
8994 3' -61.5 NC_002512.2 + 65624 0.67 0.748062
Target:  5'- cGAGGCgAUCG---ACCCGAcgGCCCCCGc -3'
miRNA:   3'- -CUCCG-UGGCccuUGGGCU--UGGGGGCu -5'
8994 3' -61.5 NC_002512.2 + 67776 0.67 0.745353
Target:  5'- -cGGCGCCGGGGucgucggugagcugGCCucagCGGucACCCCCa- -3'
miRNA:   3'- cuCCGUGGCCCU--------------UGG----GCU--UGGGGGcu -5'
8994 3' -61.5 NC_002512.2 + 69120 0.68 0.643243
Target:  5'- -cGGCcccgcuCCGGGAccuccguGCCCGGGgccggcgccguucCCCCCGAa -3'
miRNA:   3'- cuCCGu-----GGCCCU-------UGGGCUU-------------GGGGGCU- -5'
8994 3' -61.5 NC_002512.2 + 69395 0.66 0.807771
Target:  5'- -cGGCGCCGcggagauGGAACCCacGAacaugcgcucguGCCCCgCGAa -3'
miRNA:   3'- cuCCGUGGC-------CCUUGGG--CU------------UGGGG-GCU- -5'
8994 3' -61.5 NC_002512.2 + 69954 0.66 0.783346
Target:  5'- -cGGcCACCGGGGACguaUCGcacaaGGCCCCCa- -3'
miRNA:   3'- cuCC-GUGGCCCUUG---GGC-----UUGGGGGcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.