miRNA display CGI


Results 81 - 100 of 275 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8994 3' -61.5 NC_002512.2 + 70507 0.66 0.756142
Target:  5'- -cGaCGCCGcGGGACCCGcgaauggGACgCCCCGAc -3'
miRNA:   3'- cuCcGUGGC-CCUUGGGC-------UUG-GGGGCU- -5'
8994 3' -61.5 NC_002512.2 + 72740 0.66 0.808593
Target:  5'- -cGGCccGCCGcccgccccGGGCCCGccgccGACCCCCGAc -3'
miRNA:   3'- cuCCG--UGGCc-------CUUGGGC-----UUGGGGGCU- -5'
8994 3' -61.5 NC_002512.2 + 72813 0.82 0.113141
Target:  5'- uGGGCGCCGGcGAcCCCGGACCCCgGGa -3'
miRNA:   3'- cUCCGUGGCC-CUuGGGCUUGGGGgCU- -5'
8994 3' -61.5 NC_002512.2 + 73393 0.68 0.686972
Target:  5'- cAGGcCGCCGuGuccgcccagcccgccGAGCCCGccGCCCCCGAg -3'
miRNA:   3'- cUCC-GUGGC-C---------------CUUGGGCu-UGGGGGCU- -5'
8994 3' -61.5 NC_002512.2 + 75085 0.72 0.434588
Target:  5'- cGAGGCGCCguuucGGGGGCUCGAcgucGCCgCCUGGc -3'
miRNA:   3'- -CUCCGUGG-----CCCUUGGGCU----UGG-GGGCU- -5'
8994 3' -61.5 NC_002512.2 + 75345 0.69 0.625096
Target:  5'- cGGGCGCuCcGGAuuggucgGCCCGAACCgCCGGc -3'
miRNA:   3'- cUCCGUG-GcCCU-------UGGGCUUGGgGGCU- -5'
8994 3' -61.5 NC_002512.2 + 75923 0.71 0.495331
Target:  5'- -cGGCGCCGccGGAcCCCGAAgaacccgacgUCCCCGAa -3'
miRNA:   3'- cuCCGUGGC--CCUuGGGCUU----------GGGGGCU- -5'
8994 3' -61.5 NC_002512.2 + 76114 0.67 0.735353
Target:  5'- gGGGGCGCCGGGGugGugucgaugacgucgUCCGAuucgaccACCCCCc- -3'
miRNA:   3'- -CUCCGUGGCCCU--U--------------GGGCU-------UGGGGGcu -5'
8994 3' -61.5 NC_002512.2 + 77133 0.66 0.808593
Target:  5'- aGAGaccuCGCCgucgGGGGACcuuCCGAccGCCCCCGAa -3'
miRNA:   3'- -CUCc---GUGG----CCCUUG---GGCU--UGGGGGCU- -5'
8994 3' -61.5 NC_002512.2 + 77319 0.73 0.409904
Target:  5'- cGAGGCGaCGGGGuCUCGGGCUCCUGAc -3'
miRNA:   3'- -CUCCGUgGCCCUuGGGCUUGGGGGCU- -5'
8994 3' -61.5 NC_002512.2 + 78670 0.66 0.783346
Target:  5'- -cGGCGCCGGG-GCUCGGAgCCUa-- -3'
miRNA:   3'- cuCCGUGGCCCuUGGGCUUgGGGgcu -5'
8994 3' -61.5 NC_002512.2 + 79686 0.68 0.683192
Target:  5'- -cGGCcuCCGGGuuCCCGGAUCCCUc- -3'
miRNA:   3'- cuCCGu-GGCCCuuGGGCUUGGGGGcu -5'
8994 3' -61.5 NC_002512.2 + 79941 0.67 0.729859
Target:  5'- cGAGGCgGCgCGGGggUCCGccuGCCgUCGGa -3'
miRNA:   3'- -CUCCG-UG-GCCCuuGGGCu--UGGgGGCU- -5'
8994 3' -61.5 NC_002512.2 + 80701 0.66 0.791889
Target:  5'- -cGGCGuCCGGGGggcgagggcGCgCGGGCCCgCGGg -3'
miRNA:   3'- cuCCGU-GGCCCU---------UGgGCUUGGGgGCU- -5'
8994 3' -61.5 NC_002512.2 + 80737 0.67 0.711361
Target:  5'- -cGGCACCGGccccgcggcGGuCCCGggUCCCgGGg -3'
miRNA:   3'- cuCCGUGGCC---------CUuGGGCuuGGGGgCU- -5'
8994 3' -61.5 NC_002512.2 + 81051 0.69 0.597445
Target:  5'- -cGGCAgCGGuGcGCCCGGaccGCCCCCa- -3'
miRNA:   3'- cuCCGUgGCC-CuUGGGCU---UGGGGGcu -5'
8994 3' -61.5 NC_002512.2 + 81432 0.72 0.468794
Target:  5'- -cGGCuccgucccGCgGGGGGCCCG-GCCCCCGu -3'
miRNA:   3'- cuCCG--------UGgCCCUUGGGCuUGGGGGCu -5'
8994 3' -61.5 NC_002512.2 + 83030 0.66 0.765911
Target:  5'- -uGGCcCCGcGcGAGCUCGAGCaCCCUGGg -3'
miRNA:   3'- cuCCGuGGC-C-CUUGGGCUUG-GGGGCU- -5'
8994 3' -61.5 NC_002512.2 + 84466 0.68 0.682246
Target:  5'- --aGCACCGcggcGGAcgagccgaagaagACCCGGACCCCgGAc -3'
miRNA:   3'- cucCGUGGC----CCU-------------UGGGCUUGGGGgCU- -5'
8994 3' -61.5 NC_002512.2 + 86129 0.66 0.783346
Target:  5'- gGAGGUcgcggACCuGGAAgCCGAcgccgcggccGCCUCCGAg -3'
miRNA:   3'- -CUCCG-----UGGcCCUUgGGCU----------UGGGGGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.