miRNA display CGI


Results 101 - 120 of 275 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8994 3' -61.5 NC_002512.2 + 88657 0.69 0.616503
Target:  5'- uAGGUgaugaGCgGGGAccGCCCGAACccgCCCCGGc -3'
miRNA:   3'- cUCCG-----UGgCCCU--UGGGCUUG---GGGGCU- -5'
8994 3' -61.5 NC_002512.2 + 90454 0.7 0.550284
Target:  5'- -cGGCgGCCGGGccAGCUgCGggUCCCCGAu -3'
miRNA:   3'- cuCCG-UGGCCC--UUGG-GCuuGGGGGCU- -5'
8994 3' -61.5 NC_002512.2 + 92644 0.71 0.474922
Target:  5'- -cGGCGCCGGG-ACCCGcgcggauccgggacGGCCgCCCGc -3'
miRNA:   3'- cuCCGUGGCCCuUGGGC--------------UUGG-GGGCu -5'
8994 3' -61.5 NC_002512.2 + 93318 0.69 0.635603
Target:  5'- --cGCACCGGGcuGACCCGGAUCaUCCGc -3'
miRNA:   3'- cucCGUGGCCC--UUGGGCUUGG-GGGCu -5'
8994 3' -61.5 NC_002512.2 + 94248 0.86 0.056383
Target:  5'- cAGGcCGCCGGcGACCCGGACCCCCGAg -3'
miRNA:   3'- cUCC-GUGGCCcUUGGGCUUGGGGGCU- -5'
8994 3' -61.5 NC_002512.2 + 94283 0.66 0.79104
Target:  5'- -uGGCguccacgGCCGGGGagcggucguccACCCGGuuGCgCCCCGGc -3'
miRNA:   3'- cuCCG-------UGGCCCU-----------UGGGCU--UG-GGGGCU- -5'
8994 3' -61.5 NC_002512.2 + 94661 0.71 0.495331
Target:  5'- cGAGGCGgcCCGGG-GCCgGGGggcCCCCCGGc -3'
miRNA:   3'- -CUCCGU--GGCCCuUGGgCUU---GGGGGCU- -5'
8994 3' -61.5 NC_002512.2 + 94826 0.67 0.70202
Target:  5'- cGGGCGCCcgacaggcaGGGGCUguacgcgucagaCGGGCCCCCGAu -3'
miRNA:   3'- cUCCGUGGc--------CCUUGG------------GCUUGGGGGCU- -5'
8994 3' -61.5 NC_002512.2 + 94919 0.73 0.417217
Target:  5'- cGGGCAgacagcuCCGGaucacggcGAGCCgGAGCCCCCGGa -3'
miRNA:   3'- cUCCGU-------GGCC--------CUUGGgCUUGGGGGCU- -5'
8994 3' -61.5 NC_002512.2 + 95249 0.69 0.597445
Target:  5'- gGGGGCGuCCGGaGGGCCgCGcGGCUCCUGAa -3'
miRNA:   3'- -CUCCGU-GGCC-CUUGG-GC-UUGGGGGCU- -5'
8994 3' -61.5 NC_002512.2 + 95709 0.7 0.568096
Target:  5'- cGGGGgGCCGGGAGgggaagacggcucCCCGucCCCgCCGGc -3'
miRNA:   3'- -CUCCgUGGCCCUU-------------GGGCuuGGG-GGCU- -5'
8994 3' -61.5 NC_002512.2 + 96296 0.66 0.800308
Target:  5'- cAGGagGCCGGcccGCUCGggUCCCCGGc -3'
miRNA:   3'- cUCCg-UGGCCcu-UGGGCuuGGGGGCU- -5'
8994 3' -61.5 NC_002512.2 + 96547 0.68 0.664218
Target:  5'- -cGGgGCCGGGGAuCCCGGACgCCa-- -3'
miRNA:   3'- cuCCgUGGCCCUU-GGGCUUGgGGgcu -5'
8994 3' -61.5 NC_002512.2 + 97232 0.66 0.799472
Target:  5'- cGAGGCGCUGGGAgaggaGCUgCGGGCCgaguguaagcgguUCCGGg -3'
miRNA:   3'- -CUCCGUGGCCCU-----UGG-GCUUGG-------------GGGCU- -5'
8994 3' -61.5 NC_002512.2 + 97281 0.68 0.677513
Target:  5'- --cGCAUCGGGGAggccgagcgucugcuCgCCGAACCCCUGGc -3'
miRNA:   3'- cucCGUGGCCCUU---------------G-GGCUUGGGGGCU- -5'
8994 3' -61.5 NC_002512.2 + 97415 0.7 0.569038
Target:  5'- gGAGGC-CgGGGAGagacgcgcgcucCCCGGACCCgCCGc -3'
miRNA:   3'- -CUCCGuGgCCCUU------------GGGCUUGGG-GGCu -5'
8994 3' -61.5 NC_002512.2 + 97774 0.68 0.664218
Target:  5'- -cGGCcuACCGGGcGGCCCucGAGCCCCgGu -3'
miRNA:   3'- cuCCG--UGGCCC-UUGGG--CUUGGGGgCu -5'
8994 3' -61.5 NC_002512.2 + 97974 0.71 0.477561
Target:  5'- aGGGGCGCCGGuacGCCCcggGGACCUUCGAc -3'
miRNA:   3'- -CUCCGUGGCCcu-UGGG---CUUGGGGGCU- -5'
8994 3' -61.5 NC_002512.2 + 99645 0.68 0.645153
Target:  5'- aGGGC-CCGGc-GCCCGAGCcgauCCCCGGc -3'
miRNA:   3'- cUCCGuGGCCcuUGGGCUUG----GGGGCU- -5'
8994 3' -61.5 NC_002512.2 + 99912 0.71 0.513396
Target:  5'- aGGGCGCCGGGGGCCCG-----CCGAa -3'
miRNA:   3'- cUCCGUGGCCCUUGGGCuugggGGCU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.