miRNA display CGI


Results 121 - 140 of 275 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8994 3' -61.5 NC_002512.2 + 101289 0.7 0.563393
Target:  5'- cAGGUACCcGGAcguCCCGGccucucgcagggucgGCCCCCGGa -3'
miRNA:   3'- cUCCGUGGcCCUu--GGGCU---------------UGGGGGCU- -5'
8994 3' -61.5 NC_002512.2 + 101528 0.78 0.210096
Target:  5'- gGGGGCACCGcgcgacGGAGaCCGAACCCUCGAg -3'
miRNA:   3'- -CUCCGUGGC------CCUUgGGCUUGGGGGCU- -5'
8994 3' -61.5 NC_002512.2 + 101623 0.69 0.616503
Target:  5'- -cGGCGCCGGG-ACgCGAgucGCCgCUCGAg -3'
miRNA:   3'- cuCCGUGGCCCuUGgGCU---UGG-GGGCU- -5'
8994 3' -61.5 NC_002512.2 + 101665 0.68 0.677513
Target:  5'- gGGGGCACCuGGAGacagucguccccgucCCCGGuCCCgCCGGc -3'
miRNA:   3'- -CUCCGUGGcCCUU---------------GGGCUuGGG-GGCU- -5'
8994 3' -61.5 NC_002512.2 + 101814 0.66 0.783346
Target:  5'- gGAGGCuucCUGGGcGCCgCGAcgauCCUCCGGa -3'
miRNA:   3'- -CUCCGu--GGCCCuUGG-GCUu---GGGGGCU- -5'
8994 3' -61.5 NC_002512.2 + 101936 0.67 0.751662
Target:  5'- aAGGCGgCGGGcaaguccaagcugguGGCCCGcgGGCCCgCCGGc -3'
miRNA:   3'- cUCCGUgGCCC---------------UUGGGC--UUGGG-GGCU- -5'
8994 3' -61.5 NC_002512.2 + 102905 0.69 0.616503
Target:  5'- --cGCGCUGGGAgaggACCgCGGACCCCUa- -3'
miRNA:   3'- cucCGUGGCCCU----UGG-GCUUGGGGGcu -5'
8994 3' -61.5 NC_002512.2 + 102955 0.68 0.682246
Target:  5'- cGGGGCGCgggCGGGuaucgccAGCCCGGccucCCCCCGc -3'
miRNA:   3'- -CUCCGUG---GCCC-------UUGGGCUu---GGGGGCu -5'
8994 3' -61.5 NC_002512.2 + 103004 0.66 0.791889
Target:  5'- aGAGGCGCUGGaGaAGCCCcAGUCCCgGAc -3'
miRNA:   3'- -CUCCGUGGCC-C-UUGGGcUUGGGGgCU- -5'
8994 3' -61.5 NC_002512.2 + 103157 0.66 0.791889
Target:  5'- aGAGGCGacgcgccgcgcCCGGcgaggacgaGGACCUGAGCCugCCCGGc -3'
miRNA:   3'- -CUCCGU-----------GGCC---------CUUGGGCUUGG--GGGCU- -5'
8994 3' -61.5 NC_002512.2 + 103388 0.69 0.587946
Target:  5'- aGAGGCucgcgcccaacGCCGGGGAUCCGGGCgaCgCGAc -3'
miRNA:   3'- -CUCCG-----------UGGCCCUUGGGCUUGg-GgGCU- -5'
8994 3' -61.5 NC_002512.2 + 103493 0.71 0.522529
Target:  5'- -cGGCGcCCGGGGcCCCGGGCgcucUCCCGGg -3'
miRNA:   3'- cuCCGU-GGCCCUuGGGCUUG----GGGGCU- -5'
8994 3' -61.5 NC_002512.2 + 106380 0.7 0.569038
Target:  5'- cGAGGaaggACCGGGGGCCgagcacccccUGGACCCgCGAg -3'
miRNA:   3'- -CUCCg---UGGCCCUUGG----------GCUUGGGgGCU- -5'
8994 3' -61.5 NC_002512.2 + 106707 0.67 0.748062
Target:  5'- uGGGGCucuCCGGGAugaCCGcGCUCCUGu -3'
miRNA:   3'- -CUCCGu--GGCCCUug-GGCuUGGGGGCu -5'
8994 3' -61.5 NC_002512.2 + 106746 0.66 0.757035
Target:  5'- -cGGCGCCGccgcCCCGu-CCCCCGGg -3'
miRNA:   3'- cuCCGUGGCccuuGGGCuuGGGGGCU- -5'
8994 3' -61.5 NC_002512.2 + 107009 0.67 0.729859
Target:  5'- cGGGGUcgGCCGaGAGCCgGGcgcGCUCCCGAc -3'
miRNA:   3'- -CUCCG--UGGCcCUUGGgCU---UGGGGGCU- -5'
8994 3' -61.5 NC_002512.2 + 107283 0.7 0.559639
Target:  5'- cGAGGcCGCCGagacGAACCUGAucUCCCCGAu -3'
miRNA:   3'- -CUCC-GUGGCc---CUUGGGCUu-GGGGGCU- -5'
8994 3' -61.5 NC_002512.2 + 107370 0.67 0.711361
Target:  5'- cGGcGCGCCGGGGAgCCaGACCgagaCCGAg -3'
miRNA:   3'- cUC-CGUGGCCCUUgGGcUUGGg---GGCU- -5'
8994 3' -61.5 NC_002512.2 + 108435 0.71 0.513396
Target:  5'- -cGGgGCCGGGGGCCgGGGggucccUCCCCGGg -3'
miRNA:   3'- cuCCgUGGCCCUUGGgCUU------GGGGGCU- -5'
8994 3' -61.5 NC_002512.2 + 108512 0.68 0.686027
Target:  5'- cGGGCccggcgcccgaccgGCCGGGGACCCGAcggcggagaagguCCgCCGGg -3'
miRNA:   3'- cUCCG--------------UGGCCCUUGGGCUu------------GGgGGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.