Results 141 - 160 of 275 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8994 | 3' | -61.5 | NC_002512.2 | + | 108592 | 0.66 | 0.765028 |
Target: 5'- gGGGGCcCCGGGGagcggcgGCCgCGGGCCcguCCCGu -3' miRNA: 3'- -CUCCGuGGCCCU-------UGG-GCUUGG---GGGCu -5' |
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8994 | 3' | -61.5 | NC_002512.2 | + | 108837 | 0.67 | 0.736266 |
Target: 5'- cGGGCGgCGGGuACCCGGcCCagaggucgcgcucgCCCGAg -3' miRNA: 3'- cUCCGUgGCCCuUGGGCUuGG--------------GGGCU- -5' |
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8994 | 3' | -61.5 | NC_002512.2 | + | 109048 | 0.7 | 0.550284 |
Target: 5'- gGGGGCuCgGGGGACgaCCGGACCCgCCGc -3' miRNA: 3'- -CUCCGuGgCCCUUG--GGCUUGGG-GGCu -5' |
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8994 | 3' | -61.5 | NC_002512.2 | + | 110307 | 0.72 | 0.451514 |
Target: 5'- -uGGCGCgaGGGGACCCGccgGGCUCCCGc -3' miRNA: 3'- cuCCGUGg-CCCUUGGGC---UUGGGGGCu -5' |
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8994 | 3' | -61.5 | NC_002512.2 | + | 111233 | 0.69 | 0.587946 |
Target: 5'- cGGGCgGCCGGGcGCCCGGAgCgUCGGg -3' miRNA: 3'- cUCCG-UGGCCCuUGGGCUUgGgGGCU- -5' |
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8994 | 3' | -61.5 | NC_002512.2 | + | 111983 | 0.7 | 0.540977 |
Target: 5'- -uGGCgcgcugGCCGuGGAGCagcgaCGGGCCCCCGGc -3' miRNA: 3'- cuCCG------UGGC-CCUUGg----GCUUGGGGGCU- -5' |
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8994 | 3' | -61.5 | NC_002512.2 | + | 112133 | 0.67 | 0.745353 |
Target: 5'- -cGuGCAUCGGGAAgaucuggaacagguCCUGGACCCUCGc -3' miRNA: 3'- cuC-CGUGGCCCUU--------------GGGCUUGGGGGCu -5' |
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8994 | 3' | -61.5 | NC_002512.2 | + | 112563 | 0.68 | 0.654693 |
Target: 5'- -cGGCGCCagcGGGAACCCGccguCCgUCCGGu -3' miRNA: 3'- cuCCGUGG---CCCUUGGGCuu--GG-GGGCU- -5' |
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8994 | 3' | -61.5 | NC_002512.2 | + | 112775 | 0.66 | 0.79104 |
Target: 5'- cGGGGCcccgugccgcuguGCCGGGuccagggcGGCCCGcACCUCCa- -3' miRNA: 3'- -CUCCG-------------UGGCCC--------UUGGGCuUGGGGGcu -5' |
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8994 | 3' | -61.5 | NC_002512.2 | + | 112921 | 0.66 | 0.808593 |
Target: 5'- cGGGGCGUCGGcGGCCCGGuggcgcgcgaGCCCgCGGa -3' miRNA: 3'- -CUCCGUGGCCcUUGGGCU----------UGGGgGCU- -5' |
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8994 | 3' | -61.5 | NC_002512.2 | + | 112977 | 0.67 | 0.748062 |
Target: 5'- cGGGGaCGCCGuccgaGGAGCCCG---CCCCGGc -3' miRNA: 3'- -CUCC-GUGGC-----CCUUGGGCuugGGGGCU- -5' |
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8994 | 3' | -61.5 | NC_002512.2 | + | 113418 | 0.7 | 0.569038 |
Target: 5'- uGGGcCGCCGGGAucaccGCCCcg-UCCCCGAg -3' miRNA: 3'- cUCC-GUGGCCCU-----UGGGcuuGGGGGCU- -5' |
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8994 | 3' | -61.5 | NC_002512.2 | + | 117885 | 0.73 | 0.418035 |
Target: 5'- -cGGaCGCCGGGGGCCCGucgcuGCUCCaCGGc -3' miRNA: 3'- cuCC-GUGGCCCUUGGGCu----UGGGG-GCU- -5' |
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8994 | 3' | -61.5 | NC_002512.2 | + | 118780 | 0.7 | 0.558701 |
Target: 5'- -cGGCGCCuccgccgccgggcGGGAGCUgUGGGCCCCCGu -3' miRNA: 3'- cuCCGUGG-------------CCCUUGG-GCUUGGGGGCu -5' |
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8994 | 3' | -61.5 | NC_002512.2 | + | 119565 | 0.66 | 0.757035 |
Target: 5'- cGGGCGgacCgCGGGAGCCCggcGggUCCCCu- -3' miRNA: 3'- cUCCGU---G-GCCCUUGGG---CuuGGGGGcu -5' |
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8994 | 3' | -61.5 | NC_002512.2 | + | 120826 | 0.67 | 0.711361 |
Target: 5'- -cGGgACgCGGcGggUCCGGucguCCCCCGAg -3' miRNA: 3'- cuCCgUG-GCC-CuuGGGCUu---GGGGGCU- -5' |
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8994 | 3' | -61.5 | NC_002512.2 | + | 120909 | 0.67 | 0.739001 |
Target: 5'- cAGGUACaCGGcccugcugacGGACCCGGGCgaCCCGAc -3' miRNA: 3'- cUCCGUG-GCC----------CUUGGGCUUGg-GGGCU- -5' |
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8994 | 3' | -61.5 | NC_002512.2 | + | 121034 | 0.66 | 0.760597 |
Target: 5'- cGGGCgagcgcgaccucuggGCCGGGuACCC--GCCgCCCGAg -3' miRNA: 3'- cUCCG---------------UGGCCCuUGGGcuUGG-GGGCU- -5' |
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8994 | 3' | -61.5 | NC_002512.2 | + | 121342 | 0.68 | 0.664218 |
Target: 5'- aAGGC-CCGGcGGACCuucuccgccguCGggUCCCCGGc -3' miRNA: 3'- cUCCGuGGCC-CUUGG-----------GCuuGGGGGCU- -5' |
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8994 | 3' | -61.5 | NC_002512.2 | + | 121384 | 0.74 | 0.363248 |
Target: 5'- cGGGCGCCGGG--CCCGGccucGCCCuuGAc -3' miRNA: 3'- cUCCGUGGCCCuuGGGCU----UGGGggCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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