miRNA display CGI


Results 61 - 80 of 275 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8994 3' -61.5 NC_002512.2 + 149440 0.7 0.578475
Target:  5'- cGGGCGCgGGGGgagaggaaggggACCCGGgacGCCgCCGAc -3'
miRNA:   3'- cUCCGUGgCCCU------------UGGGCU---UGGgGGCU- -5'
8994 3' -61.5 NC_002512.2 + 149132 0.66 0.765911
Target:  5'- cGAGGacccCCGGGAcCCgGGACCgCCGc -3'
miRNA:   3'- -CUCCgu--GGCCCUuGGgCUUGGgGGCu -5'
8994 3' -61.5 NC_002512.2 + 149050 0.68 0.683192
Target:  5'- cGAGGCucGCCuacGGGGCCCGcuCCgCCGAc -3'
miRNA:   3'- -CUCCG--UGGc--CCUUGGGCuuGGgGGCU- -5'
8994 3' -61.5 NC_002512.2 + 149010 0.69 0.587946
Target:  5'- gGGGGcCGCCGcGGAccGCCCGAcaccgaGCCCCgCGu -3'
miRNA:   3'- -CUCC-GUGGC-CCU--UGGGCU------UGGGG-GCu -5'
8994 3' -61.5 NC_002512.2 + 148442 0.69 0.616503
Target:  5'- gGAGGa--CGGGGGCCgGGcCCCCCGc -3'
miRNA:   3'- -CUCCgugGCCCUUGGgCUuGGGGGCu -5'
8994 3' -61.5 NC_002512.2 + 147878 0.66 0.774684
Target:  5'- cGGGCGaCGGcucGCCgCGAccGCCCCCGAg -3'
miRNA:   3'- cUCCGUgGCCcu-UGG-GCU--UGGGGGCU- -5'
8994 3' -61.5 NC_002512.2 + 146808 0.67 0.70202
Target:  5'- gGAGGC-CCGGG-ACCUGGagACCUUCGc -3'
miRNA:   3'- -CUCCGuGGCCCuUGGGCU--UGGGGGCu -5'
8994 3' -61.5 NC_002512.2 + 146662 0.67 0.739001
Target:  5'- gGAGGCuuccCCGGGA--CCGAcgcucCCCCCGc -3'
miRNA:   3'- -CUCCGu---GGCCCUugGGCUu----GGGGGCu -5'
8994 3' -61.5 NC_002512.2 + 145375 0.71 0.477561
Target:  5'- aGGGCuacgACUGGGAGCCCGAcgcgGCgUCCGGg -3'
miRNA:   3'- cUCCG----UGGCCCUUGGGCU----UGgGGGCU- -5'
8994 3' -61.5 NC_002512.2 + 144283 0.68 0.67372
Target:  5'- aGAGGCGgCGGaGGcACCCGAACgcggacgcgcucUCCCGGc -3'
miRNA:   3'- -CUCCGUgGCC-CU-UGGGCUUG------------GGGGCU- -5'
8994 3' -61.5 NC_002512.2 + 142015 0.66 0.79104
Target:  5'- -cGGCcgucucuuccgcgGCCGGGGGCCgGcGACCCgCCGc -3'
miRNA:   3'- cuCCG-------------UGGCCCUUGGgC-UUGGG-GGCu -5'
8994 3' -61.5 NC_002512.2 + 139411 0.69 0.616503
Target:  5'- cGAGGaCGCCccggugaucGGGGACCCGcAGCUggCCCGGc -3'
miRNA:   3'- -CUCC-GUGG---------CCCUUGGGC-UUGG--GGGCU- -5'
8994 3' -61.5 NC_002512.2 + 139285 0.66 0.808593
Target:  5'- gGGGGCGaaGGGGggcGCCCG---CCCCGGg -3'
miRNA:   3'- -CUCCGUggCCCU---UGGGCuugGGGGCU- -5'
8994 3' -61.5 NC_002512.2 + 137895 0.68 0.683192
Target:  5'- -cGGCgACgCGGGAGaCCCGGacgcgGCCCuCCGGa -3'
miRNA:   3'- cuCCG-UG-GCCCUU-GGGCU-----UGGG-GGCU- -5'
8994 3' -61.5 NC_002512.2 + 137068 0.67 0.739001
Target:  5'- gGAGGCGCCGc--GCCCGGgaacagGCCCgCGGu -3'
miRNA:   3'- -CUCCGUGGCccuUGGGCU------UGGGgGCU- -5'
8994 3' -61.5 NC_002512.2 + 136086 0.68 0.645153
Target:  5'- gGGGGCcgGCUGcGGAcgcccgucACCCGAuccGCUCCCGAc -3'
miRNA:   3'- -CUCCG--UGGC-CCU--------UGGGCU---UGGGGGCU- -5'
8994 3' -61.5 NC_002512.2 + 135215 0.67 0.711361
Target:  5'- cGGGC-CgGGGGGCCCcccGGCCCCgGGc -3'
miRNA:   3'- cUCCGuGgCCCUUGGGc--UUGGGGgCU- -5'
8994 3' -61.5 NC_002512.2 + 135033 0.67 0.711361
Target:  5'- cAGG-AUCGGGGGCCCGucugacgcguacAGCCCCUGc -3'
miRNA:   3'- cUCCgUGGCCCUUGGGC------------UUGGGGGCu -5'
8994 3' -61.5 NC_002512.2 + 134871 0.67 0.720643
Target:  5'- cGGGCGacgccgUCGGGGACCUGGACUgCUCGGa -3'
miRNA:   3'- cUCCGU------GGCCCUUGGGCUUGG-GGGCU- -5'
8994 3' -61.5 NC_002512.2 + 134593 0.73 0.39394
Target:  5'- -cGGCGCCucguccgccgacGGGAACCCGAcCCCgCCGu -3'
miRNA:   3'- cuCCGUGG------------CCCUUGGGCUuGGG-GGCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.