miRNA display CGI


Results 81 - 100 of 275 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8994 3' -61.5 NC_002512.2 + 134236 0.76 0.281462
Target:  5'- aGAGGCuguGCCGGGGGCggCCGAgccGCCCCCu- -3'
miRNA:   3'- -CUCCG---UGGCCCUUG--GGCU---UGGGGGcu -5'
8994 3' -61.5 NC_002512.2 + 134165 0.66 0.783346
Target:  5'- cGGGgACgGGGAGccgucuuccccuCCCGGcCCCCCGu -3'
miRNA:   3'- cUCCgUGgCCCUU------------GGGCUuGGGGGCu -5'
8994 3' -61.5 NC_002512.2 + 134158 0.66 0.808593
Target:  5'- cGGGUAcCCGucGACCCGGACCCUggCGGc -3'
miRNA:   3'- cUCCGU-GGCccUUGGGCUUGGGG--GCU- -5'
8994 3' -61.5 NC_002512.2 + 133584 0.69 0.606966
Target:  5'- ---cCGCCGGGGACCCGAgcgggccgGCCUCCu- -3'
miRNA:   3'- cuccGUGGCCCUUGGGCU--------UGGGGGcu -5'
8994 3' -61.5 NC_002512.2 + 133493 0.71 0.511577
Target:  5'- cGAGGcCGCCGGuGAGucCCCGGuuuccucuccucCCCCCGAg -3'
miRNA:   3'- -CUCC-GUGGCC-CUU--GGGCUu-----------GGGGGCU- -5'
8994 3' -61.5 NC_002512.2 + 133340 0.69 0.626051
Target:  5'- -uGGCGuCCGGGAucCCCGG--CCCCGGc -3'
miRNA:   3'- cuCCGU-GGCCCUu-GGGCUugGGGGCU- -5'
8994 3' -61.5 NC_002512.2 + 132988 0.74 0.363248
Target:  5'- cGGGUaguaGCagGGGAACCCG-GCCCCCGGg -3'
miRNA:   3'- cUCCG----UGg-CCCUUGGGCuUGGGGGCU- -5'
8994 3' -61.5 NC_002512.2 + 131663 0.66 0.791889
Target:  5'- cGAGaGCACCcGGAgacuGCUCGGGaaggUCCCCGAg -3'
miRNA:   3'- -CUC-CGUGGcCCU----UGGGCUU----GGGGGCU- -5'
8994 3' -61.5 NC_002512.2 + 130477 0.71 0.474922
Target:  5'- gGGGGCGgagacgaagccgccCCGGGAGUCCGGACCCCg-- -3'
miRNA:   3'- -CUCCGU--------------GGCCCUUGGGCUUGGGGgcu -5'
8994 3' -61.5 NC_002512.2 + 130231 0.69 0.626051
Target:  5'- cGAGcUGCCGGGGAUcggcucgggcgCCGGGCCCuCCGAg -3'
miRNA:   3'- -CUCcGUGGCCCUUG-----------GGCUUGGG-GGCU- -5'
8994 3' -61.5 NC_002512.2 + 130226 0.67 0.748062
Target:  5'- -cGGCgGCgGGGAACCUcuGGGCCCCgGc -3'
miRNA:   3'- cuCCG-UGgCCCUUGGG--CUUGGGGgCu -5'
8994 3' -61.5 NC_002512.2 + 130136 0.67 0.70202
Target:  5'- cGGGGUggugucgcgGCCGcGGGGCCCGGcggcgggccgGCCCgCGAc -3'
miRNA:   3'- -CUCCG---------UGGC-CCUUGGGCU----------UGGGgGCU- -5'
8994 3' -61.5 NC_002512.2 + 129942 0.71 0.517041
Target:  5'- cAGGCACCGGcGGcagcagcaGCCgacgccgcccuucggCGGGCCCCCGGc -3'
miRNA:   3'- cUCCGUGGCC-CU--------UGG---------------GCUUGGGGGCU- -5'
8994 3' -61.5 NC_002512.2 + 129572 0.86 0.060809
Target:  5'- cGAGGCGCCGGGAcgucggcCCCGucGCCCCCGAc -3'
miRNA:   3'- -CUCCGUGGCCCUu------GGGCu-UGGGGGCU- -5'
8994 3' -61.5 NC_002512.2 + 129565 0.66 0.774684
Target:  5'- cGAGGC-CCGGGAGgCCGuGGCCgaCCu- -3'
miRNA:   3'- -CUCCGuGGCCCUUgGGC-UUGGg-GGcu -5'
8994 3' -61.5 NC_002512.2 + 128597 0.66 0.800308
Target:  5'- aGAGGCcgggacguCCGGGuaccuGCCCGuguacgcuCCCCaCGAc -3'
miRNA:   3'- -CUCCGu-------GGCCCu----UGGGCuu------GGGG-GCU- -5'
8994 3' -61.5 NC_002512.2 + 128280 0.67 0.748062
Target:  5'- -cGGCGCCGGG---CCGAcgGCCgCCCGc -3'
miRNA:   3'- cuCCGUGGCCCuugGGCU--UGG-GGGCu -5'
8994 3' -61.5 NC_002512.2 + 127917 0.68 0.693569
Target:  5'- gGAGGCGagggcggaucgguaGGGuACCCGAGgCCCCGu -3'
miRNA:   3'- -CUCCGUgg------------CCCuUGGGCUUgGGGGCu -5'
8994 3' -61.5 NC_002512.2 + 127895 0.66 0.783346
Target:  5'- uGAGGUacucgACCGucGGAucgGCCaCGAGCCCgCCGGc -3'
miRNA:   3'- -CUCCG-----UGGC--CCU---UGG-GCUUGGG-GGCU- -5'
8994 3' -61.5 NC_002512.2 + 127869 0.68 0.67372
Target:  5'- uGGGCGCgCGGGAcggguguuuUCCG-ACCCUCGAa -3'
miRNA:   3'- cUCCGUG-GCCCUu--------GGGCuUGGGGGCU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.