miRNA display CGI


Results 101 - 120 of 275 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8994 3' -61.5 NC_002512.2 + 127356 0.79 0.174369
Target:  5'- uAGGgaaACCGGGGGCCUG-ACCCCCGAc -3'
miRNA:   3'- cUCCg--UGGCCCUUGGGCuUGGGGGCU- -5'
8994 3' -61.5 NC_002512.2 + 126921 0.66 0.783346
Target:  5'- gGAGGCcggGCUGGcGAuACCCGcccGCgCCCCGGu -3'
miRNA:   3'- -CUCCG---UGGCC-CU-UGGGCu--UG-GGGGCU- -5'
8994 3' -61.5 NC_002512.2 + 126827 0.66 0.765911
Target:  5'- cGAGGUGCCGuuc-CCCGcgcuccuGCCCCCGGu -3'
miRNA:   3'- -CUCCGUGGCccuuGGGCu------UGGGGGCU- -5'
8994 3' -61.5 NC_002512.2 + 126381 0.74 0.348536
Target:  5'- -uGGCcgcCCGGGAgagcGCCCGGGgCCCCGGg -3'
miRNA:   3'- cuCCGu--GGCCCU----UGGGCUUgGGGGCU- -5'
8994 3' -61.5 NC_002512.2 + 126280 0.71 0.513396
Target:  5'- -cGGUACCGGGAGgCCGucgacaccGCCCUCGu -3'
miRNA:   3'- cuCCGUGGCCCUUgGGCu-------UGGGGGCu -5'
8994 3' -61.5 NC_002512.2 + 126246 0.66 0.783346
Target:  5'- cGAGGaggGCCGGGugUCCGAagccgACCUCCa- -3'
miRNA:   3'- -CUCCg--UGGCCCuuGGGCU-----UGGGGGcu -5'
8994 3' -61.5 NC_002512.2 + 124781 0.67 0.729859
Target:  5'- aGGGCuGCCGGG-ACCCGGggagACacgucgaCCCGAc -3'
miRNA:   3'- cUCCG-UGGCCCuUGGGCU----UGg------GGGCU- -5'
8994 3' -61.5 NC_002512.2 + 124573 0.67 0.74716
Target:  5'- gGAGGC-CCGGGAcgucaagagcgacGCCCuguCCCUCGu -3'
miRNA:   3'- -CUCCGuGGCCCU-------------UGGGcuuGGGGGCu -5'
8994 3' -61.5 NC_002512.2 + 124367 0.78 0.191502
Target:  5'- cGGGCGCCGGGGuccaGCCaGAGCCCCCc- -3'
miRNA:   3'- cUCCGUGGCCCU----UGGgCUUGGGGGcu -5'
8994 3' -61.5 NC_002512.2 + 123494 0.66 0.791889
Target:  5'- -cGGguCCaGGGGguGCUCG-GCCCCCGGu -3'
miRNA:   3'- cuCCguGG-CCCU--UGGGCuUGGGGGCU- -5'
8994 3' -61.5 NC_002512.2 + 122797 0.74 0.363248
Target:  5'- cGGGcCGCCGaccGACCCGAccGCCCCCGAg -3'
miRNA:   3'- cUCC-GUGGCcc-UUGGGCU--UGGGGGCU- -5'
8994 3' -61.5 NC_002512.2 + 122793 0.67 0.739001
Target:  5'- aGGGCGCCGGGcccuGGCggCGggUCCCCu- -3'
miRNA:   3'- cUCCGUGGCCC----UUGg-GCuuGGGGGcu -5'
8994 3' -61.5 NC_002512.2 + 121928 0.74 0.341341
Target:  5'- cGAGGCGgCGGcGGuCCCGGACCCgCGGc -3'
miRNA:   3'- -CUCCGUgGCC-CUuGGGCUUGGGgGCU- -5'
8994 3' -61.5 NC_002512.2 + 121763 0.66 0.765911
Target:  5'- --cGCGCCucucGGGACCgCGGACCgCCGAg -3'
miRNA:   3'- cucCGUGGc---CCUUGG-GCUUGGgGGCU- -5'
8994 3' -61.5 NC_002512.2 + 121436 0.74 0.363248
Target:  5'- -cGGCGCCGcccggggaGGGACCCcccGGCCCCCGGc -3'
miRNA:   3'- cuCCGUGGC--------CCUUGGGc--UUGGGGGCU- -5'
8994 3' -61.5 NC_002512.2 + 121384 0.74 0.363248
Target:  5'- cGGGCGCCGGG--CCCGGccucGCCCuuGAc -3'
miRNA:   3'- cUCCGUGGCCCuuGGGCU----UGGGggCU- -5'
8994 3' -61.5 NC_002512.2 + 121342 0.68 0.664218
Target:  5'- aAGGC-CCGGcGGACCuucuccgccguCGggUCCCCGGc -3'
miRNA:   3'- cUCCGuGGCC-CUUGG-----------GCuuGGGGGCU- -5'
8994 3' -61.5 NC_002512.2 + 121034 0.66 0.760597
Target:  5'- cGGGCgagcgcgaccucuggGCCGGGuACCC--GCCgCCCGAg -3'
miRNA:   3'- cUCCG---------------UGGCCCuUGGGcuUGG-GGGCU- -5'
8994 3' -61.5 NC_002512.2 + 120909 0.67 0.739001
Target:  5'- cAGGUACaCGGcccugcugacGGACCCGGGCgaCCCGAc -3'
miRNA:   3'- cUCCGUG-GCC----------CUUGGGCUUGg-GGGCU- -5'
8994 3' -61.5 NC_002512.2 + 120826 0.67 0.711361
Target:  5'- -cGGgACgCGGcGggUCCGGucguCCCCCGAg -3'
miRNA:   3'- cuCCgUG-GCC-CuuGGGCUu---GGGGGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.