miRNA display CGI


Results 121 - 140 of 275 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8994 3' -61.5 NC_002512.2 + 119565 0.66 0.757035
Target:  5'- cGGGCGgacCgCGGGAGCCCggcGggUCCCCu- -3'
miRNA:   3'- cUCCGU---G-GCCCUUGGG---CuuGGGGGcu -5'
8994 3' -61.5 NC_002512.2 + 118780 0.7 0.558701
Target:  5'- -cGGCGCCuccgccgccgggcGGGAGCUgUGGGCCCCCGu -3'
miRNA:   3'- cuCCGUGG-------------CCCUUGG-GCUUGGGGGCu -5'
8994 3' -61.5 NC_002512.2 + 117885 0.73 0.418035
Target:  5'- -cGGaCGCCGGGGGCCCGucgcuGCUCCaCGGc -3'
miRNA:   3'- cuCC-GUGGCCCUUGGGCu----UGGGG-GCU- -5'
8994 3' -61.5 NC_002512.2 + 113418 0.7 0.569038
Target:  5'- uGGGcCGCCGGGAucaccGCCCcg-UCCCCGAg -3'
miRNA:   3'- cUCC-GUGGCCCU-----UGGGcuuGGGGGCU- -5'
8994 3' -61.5 NC_002512.2 + 112977 0.67 0.748062
Target:  5'- cGGGGaCGCCGuccgaGGAGCCCG---CCCCGGc -3'
miRNA:   3'- -CUCC-GUGGC-----CCUUGGGCuugGGGGCU- -5'
8994 3' -61.5 NC_002512.2 + 112921 0.66 0.808593
Target:  5'- cGGGGCGUCGGcGGCCCGGuggcgcgcgaGCCCgCGGa -3'
miRNA:   3'- -CUCCGUGGCCcUUGGGCU----------UGGGgGCU- -5'
8994 3' -61.5 NC_002512.2 + 112775 0.66 0.79104
Target:  5'- cGGGGCcccgugccgcuguGCCGGGuccagggcGGCCCGcACCUCCa- -3'
miRNA:   3'- -CUCCG-------------UGGCCC--------UUGGGCuUGGGGGcu -5'
8994 3' -61.5 NC_002512.2 + 112563 0.68 0.654693
Target:  5'- -cGGCGCCagcGGGAACCCGccguCCgUCCGGu -3'
miRNA:   3'- cuCCGUGG---CCCUUGGGCuu--GG-GGGCU- -5'
8994 3' -61.5 NC_002512.2 + 112133 0.67 0.745353
Target:  5'- -cGuGCAUCGGGAAgaucuggaacagguCCUGGACCCUCGc -3'
miRNA:   3'- cuC-CGUGGCCCUU--------------GGGCUUGGGGGCu -5'
8994 3' -61.5 NC_002512.2 + 111983 0.7 0.540977
Target:  5'- -uGGCgcgcugGCCGuGGAGCagcgaCGGGCCCCCGGc -3'
miRNA:   3'- cuCCG------UGGC-CCUUGg----GCUUGGGGGCU- -5'
8994 3' -61.5 NC_002512.2 + 111233 0.69 0.587946
Target:  5'- cGGGCgGCCGGGcGCCCGGAgCgUCGGg -3'
miRNA:   3'- cUCCG-UGGCCCuUGGGCUUgGgGGCU- -5'
8994 3' -61.5 NC_002512.2 + 110307 0.72 0.451514
Target:  5'- -uGGCGCgaGGGGACCCGccgGGCUCCCGc -3'
miRNA:   3'- cuCCGUGg-CCCUUGGGC---UUGGGGGCu -5'
8994 3' -61.5 NC_002512.2 + 109048 0.7 0.550284
Target:  5'- gGGGGCuCgGGGGACgaCCGGACCCgCCGc -3'
miRNA:   3'- -CUCCGuGgCCCUUG--GGCUUGGG-GGCu -5'
8994 3' -61.5 NC_002512.2 + 108837 0.67 0.736266
Target:  5'- cGGGCGgCGGGuACCCGGcCCagaggucgcgcucgCCCGAg -3'
miRNA:   3'- cUCCGUgGCCCuUGGGCUuGG--------------GGGCU- -5'
8994 3' -61.5 NC_002512.2 + 108592 0.66 0.765028
Target:  5'- gGGGGCcCCGGGGagcggcgGCCgCGGGCCcguCCCGu -3'
miRNA:   3'- -CUCCGuGGCCCU-------UGG-GCUUGG---GGGCu -5'
8994 3' -61.5 NC_002512.2 + 108512 0.68 0.686027
Target:  5'- cGGGCccggcgcccgaccgGCCGGGGACCCGAcggcggagaagguCCgCCGGg -3'
miRNA:   3'- cUCCG--------------UGGCCCUUGGGCUu------------GGgGGCU- -5'
8994 3' -61.5 NC_002512.2 + 108435 0.71 0.513396
Target:  5'- -cGGgGCCGGGGGCCgGGGggucccUCCCCGGg -3'
miRNA:   3'- cuCCgUGGCCCUUGGgCUU------GGGGGCU- -5'
8994 3' -61.5 NC_002512.2 + 107370 0.67 0.711361
Target:  5'- cGGcGCGCCGGGGAgCCaGACCgagaCCGAg -3'
miRNA:   3'- cUC-CGUGGCCCUUgGGcUUGGg---GGCU- -5'
8994 3' -61.5 NC_002512.2 + 107283 0.7 0.559639
Target:  5'- cGAGGcCGCCGagacGAACCUGAucUCCCCGAu -3'
miRNA:   3'- -CUCC-GUGGCc---CUUGGGCUu-GGGGGCU- -5'
8994 3' -61.5 NC_002512.2 + 107009 0.67 0.729859
Target:  5'- cGGGGUcgGCCGaGAGCCgGGcgcGCUCCCGAc -3'
miRNA:   3'- -CUCCG--UGGCcCUUGGgCU---UGGGGGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.