miRNA display CGI


Results 81 - 100 of 275 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8994 3' -61.5 NC_002512.2 + 22999 0.7 0.572808
Target:  5'- -cGGCGCUGGuGAccuacccgucggcgaGCUCGGcgccGCCCCCGAa -3'
miRNA:   3'- cuCCGUGGCC-CU---------------UGGGCU----UGGGGGCU- -5'
8994 3' -61.5 NC_002512.2 + 4950 0.7 0.578475
Target:  5'- cGAGcGaCACCGGcacGGACCCGGuCCCCgCGAc -3'
miRNA:   3'- -CUC-C-GUGGCC---CUUGGGCUuGGGG-GCU- -5'
8994 3' -61.5 NC_002512.2 + 103388 0.69 0.587946
Target:  5'- aGAGGCucgcgcccaacGCCGGGGAUCCGGGCgaCgCGAc -3'
miRNA:   3'- -CUCCG-----------UGGCCCUUGGGCUUGg-GgGCU- -5'
8994 3' -61.5 NC_002512.2 + 95249 0.69 0.597445
Target:  5'- gGGGGCGuCCGGaGGGCCgCGcGGCUCCUGAa -3'
miRNA:   3'- -CUCCGU-GGCC-CUUGG-GC-UUGGGGGCU- -5'
8994 3' -61.5 NC_002512.2 + 81051 0.69 0.597445
Target:  5'- -cGGCAgCGGuGcGCCCGGaccGCCCCCa- -3'
miRNA:   3'- cuCCGUgGCC-CuUGGGCU---UGGGGGcu -5'
8994 3' -61.5 NC_002512.2 + 173978 0.69 0.597445
Target:  5'- gGAGGCGCaCGGGAgaugGCUCcAGCCCCUc- -3'
miRNA:   3'- -CUCCGUG-GCCCU----UGGGcUUGGGGGcu -5'
8994 3' -61.5 NC_002512.2 + 13457 0.69 0.606966
Target:  5'- aGGGCGgCGGcGAGCCUGGcguCCCCgGAc -3'
miRNA:   3'- cUCCGUgGCC-CUUGGGCUu--GGGGgCU- -5'
8994 3' -61.5 NC_002512.2 + 118780 0.7 0.558701
Target:  5'- -cGGCGCCuccgccgccgggcGGGAGCUgUGGGCCCCCGu -3'
miRNA:   3'- cuCCGUGG-------------CCCUUGG-GCUUGGGGGCu -5'
8994 3' -61.5 NC_002512.2 + 60860 0.7 0.550284
Target:  5'- -cGGCGCCGcucgcGGAcgccGCCCGGAUCgCCGAg -3'
miRNA:   3'- cuCCGUGGC-----CCU----UGGGCUUGGgGGCU- -5'
8994 3' -61.5 NC_002512.2 + 3401 0.7 0.550284
Target:  5'- -cGGCGagGGGAgcGCCCGGGCCCCgGc -3'
miRNA:   3'- cuCCGUggCCCU--UGGGCUUGGGGgCu -5'
8994 3' -61.5 NC_002512.2 + 126280 0.71 0.513396
Target:  5'- -cGGUACCGGGAGgCCGucgacaccGCCCUCGu -3'
miRNA:   3'- cuCCGUGGCCCUUgGGCu-------UGGGGGCu -5'
8994 3' -61.5 NC_002512.2 + 18435 0.71 0.513396
Target:  5'- cGGGGCAgCCGcaGGcGCCCGAGCUCCgGGc -3'
miRNA:   3'- -CUCCGU-GGC--CCuUGGGCUUGGGGgCU- -5'
8994 3' -61.5 NC_002512.2 + 103493 0.71 0.522529
Target:  5'- -cGGCGcCCGGGGcCCCGGGCgcucUCCCGGg -3'
miRNA:   3'- cuCCGU-GGCCCUuGGGCUUG----GGGGCU- -5'
8994 3' -61.5 NC_002512.2 + 8037 0.7 0.531724
Target:  5'- aGAGGUcCCGGu--CCCGAggcGCCCCCGc -3'
miRNA:   3'- -CUCCGuGGCCcuuGGGCU---UGGGGGCu -5'
8994 3' -61.5 NC_002512.2 + 4452 0.7 0.535419
Target:  5'- cGGGCGCgGGGGucggcgucggccccaACCCGA--CCCCGAc -3'
miRNA:   3'- cUCCGUGgCCCU---------------UGGGCUugGGGGCU- -5'
8994 3' -61.5 NC_002512.2 + 42585 0.7 0.540977
Target:  5'- cGAGGCGagcggCGGGGcggACCCGAAgCCCgGGg -3'
miRNA:   3'- -CUCCGUg----GCCCU---UGGGCUUgGGGgCU- -5'
8994 3' -61.5 NC_002512.2 + 111983 0.7 0.540977
Target:  5'- -uGGCgcgcugGCCGuGGAGCagcgaCGGGCCCCCGGc -3'
miRNA:   3'- cuCCG------UGGC-CCUUGg----GCUUGGGGGCU- -5'
8994 3' -61.5 NC_002512.2 + 5633 0.7 0.550284
Target:  5'- cGGGCGUCGGGcgccGACCCGccuCCCCCGc -3'
miRNA:   3'- cUCCGUGGCCC----UUGGGCuu-GGGGGCu -5'
8994 3' -61.5 NC_002512.2 + 29170 0.7 0.550284
Target:  5'- -cGGacCGCCGGGcggcAGCCCGAcGCCaCCCGAg -3'
miRNA:   3'- cuCC--GUGGCCC----UUGGGCU-UGG-GGGCU- -5'
8994 3' -61.5 NC_002512.2 + 133584 0.69 0.606966
Target:  5'- ---cCGCCGGGGACCCGAgcgggccgGCCUCCu- -3'
miRNA:   3'- cuccGUGGCCCUUGGGCU--------UGGGGGcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.