miRNA display CGI


Results 101 - 120 of 275 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8994 3' -61.5 NC_002512.2 + 102905 0.69 0.616503
Target:  5'- --cGCGCUGGGAgaggACCgCGGACCCCUa- -3'
miRNA:   3'- cucCGUGGCCCU----UGG-GCUUGGGGGcu -5'
8994 3' -61.5 NC_002512.2 + 75345 0.69 0.625096
Target:  5'- cGGGCGCuCcGGAuuggucgGCCCGAACCgCCGGc -3'
miRNA:   3'- cUCCGUG-GcCCU-------UGGGCUUGGgGGCU- -5'
8994 3' -61.5 NC_002512.2 + 49639 0.69 0.626051
Target:  5'- cGGGCgaGCCGGGAccAgUCGGACCCCaCGu -3'
miRNA:   3'- cUCCG--UGGCCCU--UgGGCUUGGGG-GCu -5'
8994 3' -61.5 NC_002512.2 + 130231 0.69 0.626051
Target:  5'- cGAGcUGCCGGGGAUcggcucgggcgCCGGGCCCuCCGAg -3'
miRNA:   3'- -CUCcGUGGCCCUUG-----------GGCUUGGG-GGCU- -5'
8994 3' -61.5 NC_002512.2 + 133340 0.69 0.626051
Target:  5'- -uGGCGuCCGGGAucCCCGG--CCCCGGc -3'
miRNA:   3'- cuCCGU-GGCCCUu-GGGCUugGGGGCU- -5'
8994 3' -61.5 NC_002512.2 + 95249 0.69 0.597445
Target:  5'- gGGGGCGuCCGGaGGGCCgCGcGGCUCCUGAa -3'
miRNA:   3'- -CUCCGU-GGCC-CUUGG-GC-UUGGGGGCU- -5'
8994 3' -61.5 NC_002512.2 + 103388 0.69 0.587946
Target:  5'- aGAGGCucgcgcccaacGCCGGGGAUCCGGGCgaCgCGAc -3'
miRNA:   3'- -CUCCG-----------UGGCCCUUGGGCUUGg-GgGCU- -5'
8994 3' -61.5 NC_002512.2 + 4452 0.7 0.535419
Target:  5'- cGGGCGCgGGGGucggcgucggccccaACCCGA--CCCCGAc -3'
miRNA:   3'- cUCCGUGgCCCU---------------UGGGCUugGGGGCU- -5'
8994 3' -61.5 NC_002512.2 + 42585 0.7 0.540977
Target:  5'- cGAGGCGagcggCGGGGcggACCCGAAgCCCgGGg -3'
miRNA:   3'- -CUCCGUg----GCCCU---UGGGCUUgGGGgCU- -5'
8994 3' -61.5 NC_002512.2 + 111983 0.7 0.540977
Target:  5'- -uGGCgcgcugGCCGuGGAGCagcgaCGGGCCCCCGGc -3'
miRNA:   3'- cuCCG------UGGC-CCUUGg----GCUUGGGGGCU- -5'
8994 3' -61.5 NC_002512.2 + 5633 0.7 0.550284
Target:  5'- cGGGCGUCGGGcgccGACCCGccuCCCCCGc -3'
miRNA:   3'- cUCCGUGGCCC----UUGGGCuu-GGGGGCu -5'
8994 3' -61.5 NC_002512.2 + 29170 0.7 0.550284
Target:  5'- -cGGacCGCCGGGcggcAGCCCGAcGCCaCCCGAg -3'
miRNA:   3'- cuCC--GUGGCCC----UUGGGCU-UGG-GGGCU- -5'
8994 3' -61.5 NC_002512.2 + 3401 0.7 0.550284
Target:  5'- -cGGCGagGGGAgcGCCCGGGCCCCgGc -3'
miRNA:   3'- cuCCGUggCCCU--UGGGCUUGGGGgCu -5'
8994 3' -61.5 NC_002512.2 + 60860 0.7 0.550284
Target:  5'- -cGGCGCCGcucgcGGAcgccGCCCGGAUCgCCGAg -3'
miRNA:   3'- cuCCGUGGC-----CCU----UGGGCUUGGgGGCU- -5'
8994 3' -61.5 NC_002512.2 + 118780 0.7 0.558701
Target:  5'- -cGGCGCCuccgccgccgggcGGGAGCUgUGGGCCCCCGu -3'
miRNA:   3'- cuCCGUGG-------------CCCUUGG-GCUUGGGGGCu -5'
8994 3' -61.5 NC_002512.2 + 107283 0.7 0.559639
Target:  5'- cGAGGcCGCCGagacGAACCUGAucUCCCCGAu -3'
miRNA:   3'- -CUCC-GUGGCc---CUUGGGCUu-GGGGGCU- -5'
8994 3' -61.5 NC_002512.2 + 97415 0.7 0.569038
Target:  5'- gGAGGC-CgGGGAGagacgcgcgcucCCCGGACCCgCCGc -3'
miRNA:   3'- -CUCCGuGgCCCUU------------GGGCUUGGG-GGCu -5'
8994 3' -61.5 NC_002512.2 + 113418 0.7 0.569038
Target:  5'- uGGGcCGCCGGGAucaccGCCCcg-UCCCCGAg -3'
miRNA:   3'- cUCC-GUGGCCCU-----UGGGcuuGGGGGCU- -5'
8994 3' -61.5 NC_002512.2 + 22999 0.7 0.572808
Target:  5'- -cGGCGCUGGuGAccuacccgucggcgaGCUCGGcgccGCCCCCGAa -3'
miRNA:   3'- cuCCGUGGCC-CU---------------UGGGCU----UGGGGGCU- -5'
8994 3' -61.5 NC_002512.2 + 4950 0.7 0.578475
Target:  5'- cGAGcGaCACCGGcacGGACCCGGuCCCCgCGAc -3'
miRNA:   3'- -CUC-C-GUGGCC---CUUGGGCUuGGGG-GCU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.