miRNA display CGI


Results 121 - 140 of 275 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8994 3' -61.5 NC_002512.2 + 60340 0.68 0.664218
Target:  5'- aAGGCcacgccGCCGGGcAGCCgGGACCCguUCGAg -3'
miRNA:   3'- cUCCG------UGGCCC-UUGGgCUUGGG--GGCU- -5'
8994 3' -61.5 NC_002512.2 + 121342 0.68 0.664218
Target:  5'- aAGGC-CCGGcGGACCuucuccgccguCGggUCCCCGGc -3'
miRNA:   3'- cUCCGuGGCC-CUUGG-----------GCuuGGGGGCU- -5'
8994 3' -61.5 NC_002512.2 + 101623 0.69 0.616503
Target:  5'- -cGGCGCCGGG-ACgCGAgucGCCgCUCGAg -3'
miRNA:   3'- cuCCGUGGCCCuUGgGCU---UGG-GGGCU- -5'
8994 3' -61.5 NC_002512.2 + 12277 0.69 0.616503
Target:  5'- -uGGCGCCGcccGAGuCgCCGAcgACCCCCGAg -3'
miRNA:   3'- cuCCGUGGCc--CUU-G-GGCU--UGGGGGCU- -5'
8994 3' -61.5 NC_002512.2 + 139411 0.69 0.616503
Target:  5'- cGAGGaCGCCccggugaucGGGGACCCGcAGCUggCCCGGc -3'
miRNA:   3'- -CUCC-GUGG---------CCCUUGGGC-UUGG--GGGCU- -5'
8994 3' -61.5 NC_002512.2 + 60860 0.7 0.550284
Target:  5'- -cGGCGCCGcucgcGGAcgccGCCCGGAUCgCCGAg -3'
miRNA:   3'- cuCCGUGGC-----CCU----UGGGCUUGGgGGCU- -5'
8994 3' -61.5 NC_002512.2 + 118780 0.7 0.558701
Target:  5'- -cGGCGCCuccgccgccgggcGGGAGCUgUGGGCCCCCGu -3'
miRNA:   3'- cuCCGUGG-------------CCCUUGG-GCUUGGGGGCu -5'
8994 3' -61.5 NC_002512.2 + 107283 0.7 0.559639
Target:  5'- cGAGGcCGCCGagacGAACCUGAucUCCCCGAu -3'
miRNA:   3'- -CUCC-GUGGCc---CUUGGGCUu-GGGGGCU- -5'
8994 3' -61.5 NC_002512.2 + 97415 0.7 0.569038
Target:  5'- gGAGGC-CgGGGAGagacgcgcgcucCCCGGACCCgCCGc -3'
miRNA:   3'- -CUCCGuGgCCCUU------------GGGCUUGGG-GGCu -5'
8994 3' -61.5 NC_002512.2 + 113418 0.7 0.569038
Target:  5'- uGGGcCGCCGGGAucaccGCCCcg-UCCCCGAg -3'
miRNA:   3'- cUCC-GUGGCCCU-----UGGGcuuGGGGGCU- -5'
8994 3' -61.5 NC_002512.2 + 22999 0.7 0.572808
Target:  5'- -cGGCGCUGGuGAccuacccgucggcgaGCUCGGcgccGCCCCCGAa -3'
miRNA:   3'- cuCCGUGGCC-CU---------------UGGGCU----UGGGGGCU- -5'
8994 3' -61.5 NC_002512.2 + 4950 0.7 0.578475
Target:  5'- cGAGcGaCACCGGcacGGACCCGGuCCCCgCGAc -3'
miRNA:   3'- -CUC-C-GUGGCC---CUUGGGCUuGGGG-GCU- -5'
8994 3' -61.5 NC_002512.2 + 3503 0.68 0.67372
Target:  5'- -cGGCGCCGucgucGGcccuccACCCGAGCCCgCGGg -3'
miRNA:   3'- cuCCGUGGC-----CCu-----UGGGCUUGGGgGCU- -5'
8994 3' -61.5 NC_002512.2 + 103388 0.69 0.587946
Target:  5'- aGAGGCucgcgcccaacGCCGGGGAUCCGGGCgaCgCGAc -3'
miRNA:   3'- -CUCCG-----------UGGCCCUUGGGCUUGg-GgGCU- -5'
8994 3' -61.5 NC_002512.2 + 95249 0.69 0.597445
Target:  5'- gGGGGCGuCCGGaGGGCCgCGcGGCUCCUGAa -3'
miRNA:   3'- -CUCCGU-GGCC-CUUGG-GC-UUGGGGGCU- -5'
8994 3' -61.5 NC_002512.2 + 81051 0.69 0.597445
Target:  5'- -cGGCAgCGGuGcGCCCGGaccGCCCCCa- -3'
miRNA:   3'- cuCCGUgGCC-CuUGGGCU---UGGGGGcu -5'
8994 3' -61.5 NC_002512.2 + 173978 0.69 0.597445
Target:  5'- gGAGGCGCaCGGGAgaugGCUCcAGCCCCUc- -3'
miRNA:   3'- -CUCCGUG-GCCCU----UGGGcUUGGGGGcu -5'
8994 3' -61.5 NC_002512.2 + 13457 0.69 0.606966
Target:  5'- aGGGCGgCGGcGAGCCUGGcguCCCCgGAc -3'
miRNA:   3'- cUCCGUgGCC-CUUGGGCUu--GGGGgCU- -5'
8994 3' -61.5 NC_002512.2 + 133584 0.69 0.606966
Target:  5'- ---cCGCCGGGGACCCGAgcgggccgGCCUCCu- -3'
miRNA:   3'- cuccGUGGCCCUUGGGCU--------UGGGGGcu -5'
8994 3' -61.5 NC_002512.2 + 11880 0.69 0.616503
Target:  5'- cGAGGUGgUGGacauCCCGAuggaGCCCCCGAa -3'
miRNA:   3'- -CUCCGUgGCCcuu-GGGCU----UGGGGGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.