Results 21 - 40 of 275 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8994 | 3' | -61.5 | NC_002512.2 | + | 177067 | 0.66 | 0.765911 |
Target: 5'- -uGGagaGCCGGuGACCCGcguccgucAGCCCCCGc -3' miRNA: 3'- cuCCg--UGGCCcUUGGGC--------UUGGGGGCu -5' |
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8994 | 3' | -61.5 | NC_002512.2 | + | 227082 | 0.66 | 0.765911 |
Target: 5'- --cGCGCCGGGu-CCCGccGGCCgCCGGc -3' miRNA: 3'- cucCGUGGCCCuuGGGC--UUGGgGGCU- -5' |
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8994 | 3' | -61.5 | NC_002512.2 | + | 225587 | 0.66 | 0.788487 |
Target: 5'- aGGGGCGCCGGGucuucgaccagcuGGCcgucgucguccgguCCGAcgaccuguauCCCCCGAa -3' miRNA: 3'- -CUCCGUGGCCC-------------UUG--------------GGCUu---------GGGGGCU- -5' |
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8994 | 3' | -61.5 | NC_002512.2 | + | 192198 | 0.66 | 0.800308 |
Target: 5'- -cGGC-UgGGGAggACCCGGACCCUuCGGc -3' miRNA: 3'- cuCCGuGgCCCU--UGGGCUUGGGG-GCU- -5' |
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8994 | 3' | -61.5 | NC_002512.2 | + | 76114 | 0.67 | 0.735353 |
Target: 5'- gGGGGCGCCGGGGugGugucgaugacgucgUCCGAuucgaccACCCCCc- -3' miRNA: 3'- -CUCCGUGGCCCU--U--------------GGGCU-------UGGGGGcu -5' |
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8994 | 3' | -61.5 | NC_002512.2 | + | 226871 | 0.67 | 0.748062 |
Target: 5'- gGAGGC-CCGGGAGgCCaGGAaggCCCGGg -3' miRNA: 3'- -CUCCGuGGCCCUUgGG-CUUgg-GGGCU- -5' |
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8994 | 3' | -61.5 | NC_002512.2 | + | 204770 | 0.66 | 0.774684 |
Target: 5'- uGGGGCGCgGGGAcgACCgGGggaaggagACgCCCGGg -3' miRNA: 3'- -CUCCGUGgCCCU--UGGgCU--------UGgGGGCU- -5' |
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8994 | 3' | -61.5 | NC_002512.2 | + | 77133 | 0.66 | 0.808593 |
Target: 5'- aGAGaccuCGCCgucgGGGGACcuuCCGAccGCCCCCGAa -3' miRNA: 3'- -CUCc---GUGG----CCCUUG---GGCU--UGGGGGCU- -5' |
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8994 | 3' | -61.5 | NC_002512.2 | + | 119565 | 0.66 | 0.757035 |
Target: 5'- cGGGCGgacCgCGGGAGCCCggcGggUCCCCu- -3' miRNA: 3'- cUCCGU---G-GCCCUUGGG---CuuGGGGGcu -5' |
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8994 | 3' | -61.5 | NC_002512.2 | + | 112921 | 0.66 | 0.808593 |
Target: 5'- cGGGGCGUCGGcGGCCCGGuggcgcgcgaGCCCgCGGa -3' miRNA: 3'- -CUCCGUGGCCcUUGGGCU----------UGGGgGCU- -5' |
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8994 | 3' | -61.5 | NC_002512.2 | + | 147878 | 0.66 | 0.774684 |
Target: 5'- cGGGCGaCGGcucGCCgCGAccGCCCCCGAg -3' miRNA: 3'- cUCCGUgGCCcu-UGG-GCU--UGGGGGCU- -5' |
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8994 | 3' | -61.5 | NC_002512.2 | + | 121034 | 0.66 | 0.760597 |
Target: 5'- cGGGCgagcgcgaccucuggGCCGGGuACCC--GCCgCCCGAg -3' miRNA: 3'- cUCCG---------------UGGCCCuUGGGcuUGG-GGGCU- -5' |
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8994 | 3' | -61.5 | NC_002512.2 | + | 101814 | 0.66 | 0.783346 |
Target: 5'- gGAGGCuucCUGGGcGCCgCGAcgauCCUCCGGa -3' miRNA: 3'- -CUCCGu--GGCCCuUGG-GCUu---GGGGGCU- -5' |
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8994 | 3' | -61.5 | NC_002512.2 | + | 206966 | 0.66 | 0.786778 |
Target: 5'- cGAGGuCAgcaggaagaagccgcCCGGGAuGCCCGuGGCCCgCGGg -3' miRNA: 3'- -CUCC-GU---------------GGCCCU-UGGGC-UUGGGgGCU- -5' |
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8994 | 3' | -61.5 | NC_002512.2 | + | 224252 | 0.66 | 0.791889 |
Target: 5'- gGAGGCGggUCGGc-GCCCGAcGCCCgCGAg -3' miRNA: 3'- -CUCCGU--GGCCcuUGGGCU-UGGGgGCU- -5' |
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8994 | 3' | -61.5 | NC_002512.2 | + | 180050 | 0.66 | 0.800308 |
Target: 5'- cAGGCGgUGcGGGugCCGGacgACCCCCu- -3' miRNA: 3'- cUCCGUgGC-CCUugGGCU---UGGGGGcu -5' |
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8994 | 3' | -61.5 | NC_002512.2 | + | 208890 | 0.67 | 0.72894 |
Target: 5'- gGAGGgGCCGGGAAucCCCGcgcgggaGGCUCCUa- -3' miRNA: 3'- -CUCCgUGGCCCUU--GGGC-------UUGGGGGcu -5' |
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8994 | 3' | -61.5 | NC_002512.2 | + | 219710 | 0.67 | 0.729859 |
Target: 5'- -cGGCGCUcGGGGCgCGAgaggcgGCCCCCGu -3' miRNA: 3'- cuCCGUGGcCCUUGgGCU------UGGGGGCu -5' |
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8994 | 3' | -61.5 | NC_002512.2 | + | 220163 | 0.67 | 0.739001 |
Target: 5'- aGGGCGucgugcucugcgUCGGGAGgagguuCCgCGAACCCCCGc -3' miRNA: 3'- cUCCGU------------GGCCCUU------GG-GCUUGGGGGCu -5' |
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8994 | 3' | -61.5 | NC_002512.2 | + | 130226 | 0.67 | 0.748062 |
Target: 5'- -cGGCgGCgGGGAACCUcuGGGCCCCgGc -3' miRNA: 3'- cuCCG-UGgCCCUUGGG--CUUGGGGgCu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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