miRNA display CGI


Results 41 - 60 of 275 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8994 3' -61.5 NC_002512.2 + 146662 0.67 0.739001
Target:  5'- gGAGGCuuccCCGGGA--CCGAcgcucCCCCCGc -3'
miRNA:   3'- -CUCCGu---GGCCCUugGGCUu----GGGGGCu -5'
8994 3' -61.5 NC_002512.2 + 204770 0.66 0.774684
Target:  5'- uGGGGCGCgGGGAcgACCgGGggaaggagACgCCCGGg -3'
miRNA:   3'- -CUCCGUGgCCCU--UGGgCU--------UGgGGGCU- -5'
8994 3' -61.5 NC_002512.2 + 77133 0.66 0.808593
Target:  5'- aGAGaccuCGCCgucgGGGGACcuuCCGAccGCCCCCGAa -3'
miRNA:   3'- -CUCc---GUGG----CCCUUG---GGCU--UGGGGGCU- -5'
8994 3' -61.5 NC_002512.2 + 120909 0.67 0.739001
Target:  5'- cAGGUACaCGGcccugcugacGGACCCGGGCgaCCCGAc -3'
miRNA:   3'- cUCCGUG-GCC----------CUUGGGCUUGg-GGGCU- -5'
8994 3' -61.5 NC_002512.2 + 112921 0.66 0.808593
Target:  5'- cGGGGCGUCGGcGGCCCGGuggcgcgcgaGCCCgCGGa -3'
miRNA:   3'- -CUCCGUGGCCcUUGGGCU----------UGGGgGCU- -5'
8994 3' -61.5 NC_002512.2 + 227705 0.68 0.664218
Target:  5'- -cGGCGgCGGGGGCgCGGuacggUCCCCGAc -3'
miRNA:   3'- cuCCGUgGCCCUUGgGCUu----GGGGGCU- -5'
8994 3' -61.5 NC_002512.2 + 180050 0.66 0.800308
Target:  5'- cAGGCGgUGcGGGugCCGGacgACCCCCu- -3'
miRNA:   3'- cUCCGUgGC-CCUugGGCU---UGGGGGcu -5'
8994 3' -61.5 NC_002512.2 + 101665 0.68 0.677513
Target:  5'- gGGGGCACCuGGAGacagucguccccgucCCCGGuCCCgCCGGc -3'
miRNA:   3'- -CUCCGUGGcCCUU---------------GGGCUuGGG-GGCU- -5'
8994 3' -61.5 NC_002512.2 + 155489 0.68 0.683192
Target:  5'- -cGGCACCG----UCCGGACCCCCa- -3'
miRNA:   3'- cuCCGUGGCccuuGGGCUUGGGGGcu -5'
8994 3' -61.5 NC_002512.2 + 146808 0.67 0.70202
Target:  5'- gGAGGC-CCGGG-ACCUGGagACCUUCGc -3'
miRNA:   3'- -CUCCGuGGCCCuUGGGCU--UGGGGGCu -5'
8994 3' -61.5 NC_002512.2 + 135033 0.67 0.711361
Target:  5'- cAGG-AUCGGGGGCCCGucugacgcguacAGCCCCUGc -3'
miRNA:   3'- cUCCgUGGCCCUUGGGC------------UUGGGGGCu -5'
8994 3' -61.5 NC_002512.2 + 208890 0.67 0.72894
Target:  5'- gGAGGgGCCGGGAAucCCCGcgcgggaGGCUCCUa- -3'
miRNA:   3'- -CUCCgUGGCCCUU--GGGC-------UUGGGGGcu -5'
8994 3' -61.5 NC_002512.2 + 219710 0.67 0.729859
Target:  5'- -cGGCGCUcGGGGCgCGAgaggcgGCCCCCGu -3'
miRNA:   3'- cuCCGUGGcCCUUGgGCU------UGGGGGCu -5'
8994 3' -61.5 NC_002512.2 + 128280 0.67 0.748062
Target:  5'- -cGGCGCCGGG---CCGAcgGCCgCCCGc -3'
miRNA:   3'- cuCCGUGGCCCuugGGCU--UGG-GGGCu -5'
8994 3' -61.5 NC_002512.2 + 119565 0.66 0.757035
Target:  5'- cGGGCGgacCgCGGGAGCCCggcGggUCCCCu- -3'
miRNA:   3'- cUCCGU---G-GCCCUUGGG---CuuGGGGGcu -5'
8994 3' -61.5 NC_002512.2 + 177067 0.66 0.765911
Target:  5'- -uGGagaGCCGGuGACCCGcguccgucAGCCCCCGc -3'
miRNA:   3'- cuCCg--UGGCCcUUGGGC--------UUGGGGGCu -5'
8994 3' -61.5 NC_002512.2 + 227082 0.66 0.765911
Target:  5'- --cGCGCCGGGu-CCCGccGGCCgCCGGc -3'
miRNA:   3'- cucCGUGGCCCuuGGGC--UUGGgGGCU- -5'
8994 3' -61.5 NC_002512.2 + 101814 0.66 0.783346
Target:  5'- gGAGGCuucCUGGGcGCCgCGAcgauCCUCCGGa -3'
miRNA:   3'- -CUCCGu--GGCCCuUGG-GCUu---GGGGGCU- -5'
8994 3' -61.5 NC_002512.2 + 206966 0.66 0.786778
Target:  5'- cGAGGuCAgcaggaagaagccgcCCGGGAuGCCCGuGGCCCgCGGg -3'
miRNA:   3'- -CUCC-GU---------------GGCCCU-UGGGC-UUGGGgGCU- -5'
8994 3' -61.5 NC_002512.2 + 224252 0.66 0.791889
Target:  5'- gGAGGCGggUCGGc-GCCCGAcGCCCgCGAg -3'
miRNA:   3'- -CUCCGU--GGCCcuUGGGCU-UGGGgGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.