Results 61 - 80 of 275 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8994 | 3' | -61.5 | NC_002512.2 | + | 219710 | 0.67 | 0.729859 |
Target: 5'- -cGGCGCUcGGGGCgCGAgaggcgGCCCCCGu -3' miRNA: 3'- cuCCGUGGcCCUUGgGCU------UGGGGGCu -5' |
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8994 | 3' | -61.5 | NC_002512.2 | + | 220132 | 0.67 | 0.711361 |
Target: 5'- cGGGGCGgCGGGuccgGCuCCGccGCCCCCa- -3' miRNA: 3'- -CUCCGUgGCCCu---UG-GGCu-UGGGGGcu -5' |
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8994 | 3' | -61.5 | NC_002512.2 | + | 96296 | 0.66 | 0.800308 |
Target: 5'- cAGGagGCCGGcccGCUCGggUCCCCGGc -3' miRNA: 3'- cUCCg-UGGCCcu-UGGGCuuGGGGGCU- -5' |
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8994 | 3' | -61.5 | NC_002512.2 | + | 190949 | 0.66 | 0.79104 |
Target: 5'- cGGGcGCACgCGGGcGCCCGccgcggcGGCCCCUc- -3' miRNA: 3'- -CUC-CGUG-GCCCuUGGGC-------UUGGGGGcu -5' |
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8994 | 3' | -61.5 | NC_002512.2 | + | 221710 | 0.66 | 0.783346 |
Target: 5'- -cGGCcUCGGGugcuACgCCGAgAUCCCCGAg -3' miRNA: 3'- cuCCGuGGCCCu---UG-GGCU-UGGGGGCU- -5' |
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8994 | 3' | -61.5 | NC_002512.2 | + | 127895 | 0.66 | 0.783346 |
Target: 5'- uGAGGUacucgACCGucGGAucgGCCaCGAGCCCgCCGGc -3' miRNA: 3'- -CUCCG-----UGGC--CCU---UGG-GCUUGGG-GGCU- -5' |
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8994 | 3' | -61.5 | NC_002512.2 | + | 149132 | 0.66 | 0.765911 |
Target: 5'- cGAGGacccCCGGGAcCCgGGACCgCCGc -3' miRNA: 3'- -CUCCgu--GGCCCUuGGgCUUGGgGGCu -5' |
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8994 | 3' | -61.5 | NC_002512.2 | + | 121034 | 0.66 | 0.760597 |
Target: 5'- cGGGCgagcgcgaccucuggGCCGGGuACCC--GCCgCCCGAg -3' miRNA: 3'- cUCCG---------------UGGCCCuUGGGcuUGG-GGGCU- -5' |
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8994 | 3' | -61.5 | NC_002512.2 | + | 226871 | 0.67 | 0.748062 |
Target: 5'- gGAGGC-CCGGGAGgCCaGGAaggCCCGGg -3' miRNA: 3'- -CUCCGuGGCCCUUgGG-CUUgg-GGGCU- -5' |
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8994 | 3' | -61.5 | NC_002512.2 | + | 112977 | 0.67 | 0.748062 |
Target: 5'- cGGGGaCGCCGuccgaGGAGCCCG---CCCCGGc -3' miRNA: 3'- -CUCC-GUGGC-----CCUUGGGCuugGGGGCU- -5' |
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8994 | 3' | -61.5 | NC_002512.2 | + | 195351 | 0.7 | 0.540977 |
Target: 5'- -cGGCGCCGGGAACCCcgGGugCUggUCGGc -3' miRNA: 3'- cuCCGUGGCCCUUGGG--CUugGG--GGCU- -5' |
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8994 | 3' | -61.5 | NC_002512.2 | + | 109048 | 0.7 | 0.550284 |
Target: 5'- gGGGGCuCgGGGGACgaCCGGACCCgCCGc -3' miRNA: 3'- -CUCCGuGgCCCUUG--GGCUUGGG-GGCu -5' |
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8994 | 3' | -61.5 | NC_002512.2 | + | 229695 | 0.67 | 0.70202 |
Target: 5'- cGGGGgGCCaGGGcAGCCCacGCCCuCCGGc -3' miRNA: 3'- -CUCCgUGG-CCC-UUGGGcuUGGG-GGCU- -5' |
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8994 | 3' | -61.5 | NC_002512.2 | + | 108512 | 0.68 | 0.686027 |
Target: 5'- cGGGCccggcgcccgaccgGCCGGGGACCCGAcggcggagaagguCCgCCGGg -3' miRNA: 3'- cUCCG--------------UGGCCCUUGGGCUu------------GGgGGCU- -5' |
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8994 | 3' | -61.5 | NC_002512.2 | + | 101665 | 0.68 | 0.677513 |
Target: 5'- gGGGGCACCuGGAGacagucguccccgucCCCGGuCCCgCCGGc -3' miRNA: 3'- -CUCCGUGGcCCUU---------------GGGCUuGGG-GGCU- -5' |
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8994 | 3' | -61.5 | NC_002512.2 | + | 227705 | 0.68 | 0.664218 |
Target: 5'- -cGGCGgCGGGGGCgCGGuacggUCCCCGAc -3' miRNA: 3'- cuCCGUgGCCCUUGgGCUu----GGGGGCU- -5' |
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8994 | 3' | -61.5 | NC_002512.2 | + | 93318 | 0.69 | 0.635603 |
Target: 5'- --cGCACCGGGcuGACCCGGAUCaUCCGc -3' miRNA: 3'- cucCGUGGCCC--UUGGGCUUGG-GGGCu -5' |
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8994 | 3' | -61.5 | NC_002512.2 | + | 214778 | 0.69 | 0.626051 |
Target: 5'- -cGGCGCCGGucGCCCuccGggUCCCCu- -3' miRNA: 3'- cuCCGUGGCCcuUGGG---CuuGGGGGcu -5' |
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8994 | 3' | -61.5 | NC_002512.2 | + | 149010 | 0.69 | 0.587946 |
Target: 5'- gGGGGcCGCCGcGGAccGCCCGAcaccgaGCCCCgCGu -3' miRNA: 3'- -CUCC-GUGGC-CCU--UGGGCU------UGGGG-GCu -5' |
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8994 | 3' | -61.5 | NC_002512.2 | + | 106380 | 0.7 | 0.569038 |
Target: 5'- cGAGGaaggACCGGGGGCCgagcacccccUGGACCCgCGAg -3' miRNA: 3'- -CUCCg---UGGCCCUUGG----------GCUUGGGgGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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