miRNA display CGI


Results 81 - 100 of 275 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8994 3' -61.5 NC_002512.2 + 292 0.67 0.70202
Target:  5'- cGGGGgGCCaGGGcAGCCCacGCCCuCCGGc -3'
miRNA:   3'- -CUCCgUGG-CCC-UUGGGcuUGGG-GGCU- -5'
8994 3' -61.5 NC_002512.2 + 149050 0.68 0.683192
Target:  5'- cGAGGCucGCCuacGGGGCCCGcuCCgCCGAc -3'
miRNA:   3'- -CUCCG--UGGc--CCUUGGGCuuGGgGGCU- -5'
8994 3' -61.5 NC_002512.2 + 144283 0.68 0.67372
Target:  5'- aGAGGCGgCGGaGGcACCCGAACgcggacgcgcucUCCCGGc -3'
miRNA:   3'- -CUCCGUgGCC-CU-UGGGCUUG------------GGGGCU- -5'
8994 3' -61.5 NC_002512.2 + 96547 0.68 0.664218
Target:  5'- -cGGgGCCGGGGAuCCCGGACgCCa-- -3'
miRNA:   3'- cuCCgUGGCCCUU-GGGCUUGgGGgcu -5'
8994 3' -61.5 NC_002512.2 + 225808 0.69 0.635603
Target:  5'- cGGGCgGCCGGGuGGCCUGGGaCCUCGAg -3'
miRNA:   3'- cUCCG-UGGCCC-UUGGGCUUgGGGGCU- -5'
8994 3' -61.5 NC_002512.2 + 149010 0.69 0.587946
Target:  5'- gGGGGcCGCCGcGGAccGCCCGAcaccgaGCCCCgCGu -3'
miRNA:   3'- -CUCC-GUGGC-CCU--UGGGCU------UGGGG-GCu -5'
8994 3' -61.5 NC_002512.2 + 106380 0.7 0.569038
Target:  5'- cGAGGaaggACCGGGGGCCgagcacccccUGGACCCgCGAg -3'
miRNA:   3'- -CUCCg---UGGCCCUUGG----------GCUUGGGgGCU- -5'
8994 3' -61.5 NC_002512.2 + 112977 0.67 0.748062
Target:  5'- cGGGGaCGCCGuccgaGGAGCCCG---CCCCGGc -3'
miRNA:   3'- -CUCC-GUGGC-----CCUUGGGCuugGGGGCU- -5'
8994 3' -61.5 NC_002512.2 + 226871 0.67 0.748062
Target:  5'- gGAGGC-CCGGGAGgCCaGGAaggCCCGGg -3'
miRNA:   3'- -CUCCGuGGCCCUUgGG-CUUgg-GGGCU- -5'
8994 3' -61.5 NC_002512.2 + 121034 0.66 0.760597
Target:  5'- cGGGCgagcgcgaccucuggGCCGGGuACCC--GCCgCCCGAg -3'
miRNA:   3'- cUCCG---------------UGGCCCuUGGGcuUGG-GGGCU- -5'
8994 3' -61.5 NC_002512.2 + 4523 0.71 0.513396
Target:  5'- uGAGuuGCCGGG-ACCCGGACaccaauaCCCGGa -3'
miRNA:   3'- -CUCcgUGGCCCuUGGGCUUGg------GGGCU- -5'
8994 3' -61.5 NC_002512.2 + 75923 0.71 0.495331
Target:  5'- -cGGCGCCGccGGAcCCCGAAgaacccgacgUCCCCGAa -3'
miRNA:   3'- cuCCGUGGC--CCUuGGGCUU----------GGGGGCU- -5'
8994 3' -61.5 NC_002512.2 + 92644 0.71 0.474922
Target:  5'- -cGGCGCCGGG-ACCCGcgcggauccgggacGGCCgCCCGc -3'
miRNA:   3'- cuCCGUGGCCCuUGGGC--------------UUGG-GGGCu -5'
8994 3' -61.5 NC_002512.2 + 208423 0.72 0.451514
Target:  5'- cGGGCGCCGcu--CCCGGcgccgGCCCCCGAu -3'
miRNA:   3'- cUCCGUGGCccuuGGGCU-----UGGGGGCU- -5'
8994 3' -61.5 NC_002512.2 + 117885 0.73 0.418035
Target:  5'- -cGGaCGCCGGGGGCCCGucgcuGCUCCaCGGc -3'
miRNA:   3'- cuCC-GUGGCCCUUGGGCu----UGGGG-GCU- -5'
8994 3' -61.5 NC_002512.2 + 96296 0.66 0.800308
Target:  5'- cAGGagGCCGGcccGCUCGggUCCCCGGc -3'
miRNA:   3'- cUCCg-UGGCCcu-UGGGCuuGGGGGCU- -5'
8994 3' -61.5 NC_002512.2 + 190949 0.66 0.79104
Target:  5'- cGGGcGCACgCGGGcGCCCGccgcggcGGCCCCUc- -3'
miRNA:   3'- -CUC-CGUG-GCCCuUGGGC-------UUGGGGGcu -5'
8994 3' -61.5 NC_002512.2 + 221710 0.66 0.783346
Target:  5'- -cGGCcUCGGGugcuACgCCGAgAUCCCCGAg -3'
miRNA:   3'- cuCCGuGGCCCu---UG-GGCU-UGGGGGCU- -5'
8994 3' -61.5 NC_002512.2 + 127895 0.66 0.783346
Target:  5'- uGAGGUacucgACCGucGGAucgGCCaCGAGCCCgCCGGc -3'
miRNA:   3'- -CUCCG-----UGGC--CCU---UGG-GCUUGGG-GGCU- -5'
8994 3' -61.5 NC_002512.2 + 149132 0.66 0.765911
Target:  5'- cGAGGacccCCGGGAcCCgGGACCgCCGc -3'
miRNA:   3'- -CUCCgu--GGCCCUuGGgCUUGGgGGCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.