miRNA display CGI


Results 101 - 120 of 275 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8994 3' -61.5 NC_002512.2 + 94919 0.73 0.417217
Target:  5'- cGGGCAgacagcuCCGGaucacggcGAGCCgGAGCCCCCGGa -3'
miRNA:   3'- cUCCGU-------GGCC--------CUUGGgCUUGGGGGCU- -5'
8994 3' -61.5 NC_002512.2 + 134593 0.73 0.39394
Target:  5'- -cGGCGCCucguccgccgacGGGAACCCGAcCCCgCCGu -3'
miRNA:   3'- cuCCGUGG------------CCCUUGGGCUuGGG-GGCu -5'
8994 3' -61.5 NC_002512.2 + 126381 0.74 0.348536
Target:  5'- -uGGCcgcCCGGGAgagcGCCCGGGgCCCCGGg -3'
miRNA:   3'- cuCCGu--GGCCCU----UGGGCUUgGGGGCU- -5'
8994 3' -61.5 NC_002512.2 + 96547 0.68 0.664218
Target:  5'- -cGGgGCCGGGGAuCCCGGACgCCa-- -3'
miRNA:   3'- cuCCgUGGCCCUU-GGGCUUGgGGgcu -5'
8994 3' -61.5 NC_002512.2 + 144283 0.68 0.67372
Target:  5'- aGAGGCGgCGGaGGcACCCGAACgcggacgcgcucUCCCGGc -3'
miRNA:   3'- -CUCCGUgGCC-CU-UGGGCUUG------------GGGGCU- -5'
8994 3' -61.5 NC_002512.2 + 149050 0.68 0.683192
Target:  5'- cGAGGCucGCCuacGGGGCCCGcuCCgCCGAc -3'
miRNA:   3'- -CUCCG--UGGc--CCUUGGGCuuGGgGGCU- -5'
8994 3' -61.5 NC_002512.2 + 190949 0.66 0.79104
Target:  5'- cGGGcGCACgCGGGcGCCCGccgcggcGGCCCCUc- -3'
miRNA:   3'- -CUC-CGUG-GCCCuUGGGC-------UUGGGGGcu -5'
8994 3' -61.5 NC_002512.2 + 221710 0.66 0.783346
Target:  5'- -cGGCcUCGGGugcuACgCCGAgAUCCCCGAg -3'
miRNA:   3'- cuCCGuGGCCCu---UG-GGCU-UGGGGGCU- -5'
8994 3' -61.5 NC_002512.2 + 127895 0.66 0.783346
Target:  5'- uGAGGUacucgACCGucGGAucgGCCaCGAGCCCgCCGGc -3'
miRNA:   3'- -CUCCG-----UGGC--CCU---UGG-GCUUGGG-GGCU- -5'
8994 3' -61.5 NC_002512.2 + 149132 0.66 0.765911
Target:  5'- cGAGGacccCCGGGAcCCgGGACCgCCGc -3'
miRNA:   3'- -CUCCgu--GGCCCUuGGgCUUGGgGGCu -5'
8994 3' -61.5 NC_002512.2 + 121034 0.66 0.760597
Target:  5'- cGGGCgagcgcgaccucuggGCCGGGuACCC--GCCgCCCGAg -3'
miRNA:   3'- cUCCG---------------UGGCCCuUGGGcuUGG-GGGCU- -5'
8994 3' -61.5 NC_002512.2 + 226871 0.67 0.748062
Target:  5'- gGAGGC-CCGGGAGgCCaGGAaggCCCGGg -3'
miRNA:   3'- -CUCCGuGGCCCUUgGG-CUUgg-GGGCU- -5'
8994 3' -61.5 NC_002512.2 + 112977 0.67 0.748062
Target:  5'- cGGGGaCGCCGuccgaGGAGCCCG---CCCCGGc -3'
miRNA:   3'- -CUCC-GUGGC-----CCUUGGGCuugGGGGCU- -5'
8994 3' -61.5 NC_002512.2 + 162127 0.67 0.729859
Target:  5'- -cGGCGCCGGaGAcgACCCcGGCUCgCGAg -3'
miRNA:   3'- cuCCGUGGCC-CU--UGGGcUUGGGgGCU- -5'
8994 3' -61.5 NC_002512.2 + 200103 0.67 0.727102
Target:  5'- cGGGGuCGCCGGGGuacuucagcaucGCcgucgcgucgaucgCCGGGCCCCCu- -3'
miRNA:   3'- -CUCC-GUGGCCCU------------UG--------------GGCUUGGGGGcu -5'
8994 3' -61.5 NC_002512.2 + 217102 0.67 0.711361
Target:  5'- aGGGGCAgCGGGGGCgccgCCGAGuCCUgCGGc -3'
miRNA:   3'- -CUCCGUgGCCCUUG----GGCUU-GGGgGCU- -5'
8994 3' -61.5 NC_002512.2 + 292 0.67 0.70202
Target:  5'- cGGGGgGCCaGGGcAGCCCacGCCCuCCGGc -3'
miRNA:   3'- -CUCCgUGG-CCC-UUGGGcuUGGG-GGCU- -5'
8994 3' -61.5 NC_002512.2 + 150199 0.78 0.210096
Target:  5'- aGAGGgAuCCGGGAACCCGGagGCCgCCGGg -3'
miRNA:   3'- -CUCCgU-GGCCCUUGGGCU--UGGgGGCU- -5'
8994 3' -61.5 NC_002512.2 + 8037 0.7 0.531724
Target:  5'- aGAGGUcCCGGu--CCCGAggcGCCCCCGc -3'
miRNA:   3'- -CUCCGuGGCCcuuGGGCU---UGGGGGCu -5'
8994 3' -61.5 NC_002512.2 + 1917 0.68 0.64897
Target:  5'- -cGGCGCCGGG-GCCCuccucuccggcuCCCCCGc -3'
miRNA:   3'- cuCCGUGGCCCuUGGGcuu---------GGGGGCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.