miRNA display CGI


Results 121 - 140 of 275 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8994 3' -61.5 NC_002512.2 + 69120 0.68 0.643243
Target:  5'- -cGGCcccgcuCCGGGAccuccguGCCCGGGgccggcgccguucCCCCCGAa -3'
miRNA:   3'- cuCCGu-----GGCCCU-------UGGGCUU-------------GGGGGCU- -5'
8994 3' -61.5 NC_002512.2 + 154736 0.66 0.774684
Target:  5'- -cGG-ACaCGGGAAUCC--GCCCCCGGu -3'
miRNA:   3'- cuCCgUG-GCCCUUGGGcuUGGGGGCU- -5'
8994 3' -61.5 NC_002512.2 + 62308 0.68 0.645153
Target:  5'- aGAGGCggcggaugACCGGGAagaAgCCGAcgggcACCCCCu- -3'
miRNA:   3'- -CUCCG--------UGGCCCU---UgGGCU-----UGGGGGcu -5'
8994 3' -61.5 NC_002512.2 + 136086 0.68 0.645153
Target:  5'- gGGGGCcgGCUGcGGAcgcccgucACCCGAuccGCUCCCGAc -3'
miRNA:   3'- -CUCCG--UGGC-CCU--------UGGGCU---UGGGGGCU- -5'
8994 3' -61.5 NC_002512.2 + 8037 0.7 0.531724
Target:  5'- aGAGGUcCCGGu--CCCGAggcGCCCCCGc -3'
miRNA:   3'- -CUCCGuGGCCcuuGGGCU---UGGGGGCu -5'
8994 3' -61.5 NC_002512.2 + 103493 0.71 0.522529
Target:  5'- -cGGCGcCCGGGGcCCCGGGCgcucUCCCGGg -3'
miRNA:   3'- cuCCGU-GGCCCUuGGGCUUG----GGGGCU- -5'
8994 3' -61.5 NC_002512.2 + 1917 0.68 0.64897
Target:  5'- -cGGCGCCGGG-GCCCuccucuccggcuCCCCCGc -3'
miRNA:   3'- cuCCGUGGCCCuUGGGcuu---------GGGGGCu -5'
8994 3' -61.5 NC_002512.2 + 43908 0.66 0.783346
Target:  5'- -cGGCGCaGGGAcaGgCCGuuGCCCUCGAg -3'
miRNA:   3'- cuCCGUGgCCCU--UgGGCu-UGGGGGCU- -5'
8994 3' -61.5 NC_002512.2 + 18435 0.71 0.513396
Target:  5'- cGGGGCAgCCGcaGGcGCCCGAGCUCCgGGc -3'
miRNA:   3'- -CUCCGU-GGC--CCuUGGGCUUGGGGgCU- -5'
8994 3' -61.5 NC_002512.2 + 77319 0.73 0.409904
Target:  5'- cGAGGCGaCGGGGuCUCGGGCUCCUGAc -3'
miRNA:   3'- -CUCCGUgGCCCUuGGGCUUGGGGGCU- -5'
8994 3' -61.5 NC_002512.2 + 7452 0.66 0.765911
Target:  5'- -cGGC-CCGGGGgaaGCCgCGGcgcggcugccgGCCCCCGc -3'
miRNA:   3'- cuCCGuGGCCCU---UGG-GCU-----------UGGGGGCu -5'
8994 3' -61.5 NC_002512.2 + 55625 0.66 0.765911
Target:  5'- cGAGaCcCCGGG-ACCCGGACCCgggCGAg -3'
miRNA:   3'- -CUCcGuGGCCCuUGGGCUUGGGg--GCU- -5'
8994 3' -61.5 NC_002512.2 + 83030 0.66 0.765911
Target:  5'- -uGGCcCCGcGcGAGCUCGAGCaCCCUGGg -3'
miRNA:   3'- cuCCGuGGC-C-CUUGGGCUUG-GGGGCU- -5'
8994 3' -61.5 NC_002512.2 + 5505 0.66 0.765911
Target:  5'- --cGCGCCGGGGuCgCGAGgUCCCGGa -3'
miRNA:   3'- cucCGUGGCCCUuGgGCUUgGGGGCU- -5'
8994 3' -61.5 NC_002512.2 + 121763 0.66 0.765911
Target:  5'- --cGCGCCucucGGGACCgCGGACCgCCGAg -3'
miRNA:   3'- cucCGUGGc---CCUUGG-GCUUGGgGGCU- -5'
8994 3' -61.5 NC_002512.2 + 226496 0.66 0.774684
Target:  5'- -uGGUccuCUGGGGACCUguGGGCCCCgCGGa -3'
miRNA:   3'- cuCCGu--GGCCCUUGGG--CUUGGGG-GCU- -5'
8994 3' -61.5 NC_002512.2 + 129565 0.66 0.774684
Target:  5'- cGAGGC-CCGGGAGgCCGuGGCCgaCCu- -3'
miRNA:   3'- -CUCCGuGGCCCUUgGGC-UUGGg-GGcu -5'
8994 3' -61.5 NC_002512.2 + 126827 0.66 0.765911
Target:  5'- cGAGGUGCCGuuc-CCCGcgcuccuGCCCCCGGu -3'
miRNA:   3'- -CUCCGUGGCccuuGGGCu------UGGGGGCU- -5'
8994 3' -61.5 NC_002512.2 + 18093 0.66 0.78076
Target:  5'- --cGCGgCGGGAcggcccccgcggccACCCGGGCCUCCa- -3'
miRNA:   3'- cucCGUgGCCCU--------------UGGGCUUGGGGGcu -5'
8994 3' -61.5 NC_002512.2 + 24233 0.66 0.783346
Target:  5'- cGAGGCGUCGGGccCgCCGAcggcguCCCCCGc -3'
miRNA:   3'- -CUCCGUGGCCCuuG-GGCUu-----GGGGGCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.