miRNA display CGI


Results 21 - 40 of 275 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8994 3' -61.5 NC_002512.2 + 21467 0.66 0.791889
Target:  5'- -cGGCGCCGGGAgcggcGCCCguaGAGCaUCCGc -3'
miRNA:   3'- cuCCGUGGCCCU-----UGGG---CUUGgGGGCu -5'
8994 3' -61.5 NC_002512.2 + 131663 0.66 0.791889
Target:  5'- cGAGaGCACCcGGAgacuGCUCGGGaaggUCCCCGAg -3'
miRNA:   3'- -CUC-CGUGGcCCU----UGGGCUU----GGGGGCU- -5'
8994 3' -61.5 NC_002512.2 + 224252 0.66 0.791889
Target:  5'- gGAGGCGggUCGGc-GCCCGAcGCCCgCGAg -3'
miRNA:   3'- -CUCCGU--GGCCcuUGGGCU-UGGGgGCU- -5'
8994 3' -61.5 NC_002512.2 + 9749 0.66 0.791889
Target:  5'- gGGGGCGgCGGagccGGACCCGccGCCCCgCGu -3'
miRNA:   3'- -CUCCGUgGCC----CUUGGGCu-UGGGG-GCu -5'
8994 3' -61.5 NC_002512.2 + 123494 0.66 0.791889
Target:  5'- -cGGguCCaGGGGguGCUCG-GCCCCCGGu -3'
miRNA:   3'- cuCCguGG-CCCU--UGGGCuUGGGGGCU- -5'
8994 3' -61.5 NC_002512.2 + 103004 0.66 0.791889
Target:  5'- aGAGGCGCUGGaGaAGCCCcAGUCCCgGAc -3'
miRNA:   3'- -CUCCGUGGCC-C-UUGGGcUUGGGGgCU- -5'
8994 3' -61.5 NC_002512.2 + 80701 0.66 0.791889
Target:  5'- -cGGCGuCCGGGGggcgagggcGCgCGGGCCCgCGGg -3'
miRNA:   3'- cuCCGU-GGCCCU---------UGgGCUUGGGgGCU- -5'
8994 3' -61.5 NC_002512.2 + 103157 0.66 0.791889
Target:  5'- aGAGGCGacgcgccgcgcCCGGcgaggacgaGGACCUGAGCCugCCCGGc -3'
miRNA:   3'- -CUCCGU-----------GGCC---------CUUGGGCUUGG--GGGCU- -5'
8994 3' -61.5 NC_002512.2 + 30597 0.66 0.791889
Target:  5'- gGAGGCcaccaACCGGaGGGCgcggauguUCGGGCCgCCCGAc -3'
miRNA:   3'- -CUCCG-----UGGCC-CUUG--------GGCUUGG-GGGCU- -5'
8994 3' -61.5 NC_002512.2 + 94283 0.66 0.79104
Target:  5'- -uGGCguccacgGCCGGGGagcggucguccACCCGGuuGCgCCCCGGc -3'
miRNA:   3'- cuCCG-------UGGCCCU-----------UGGGCU--UG-GGGGCU- -5'
8994 3' -61.5 NC_002512.2 + 142015 0.66 0.79104
Target:  5'- -cGGCcgucucuuccgcgGCCGGGGGCCgGcGACCCgCCGc -3'
miRNA:   3'- cuCCG-------------UGGCCCUUGGgC-UUGGG-GGCu -5'
8994 3' -61.5 NC_002512.2 + 190949 0.66 0.79104
Target:  5'- cGGGcGCACgCGGGcGCCCGccgcggcGGCCCCUc- -3'
miRNA:   3'- -CUC-CGUG-GCCCuUGGGC-------UUGGGGGcu -5'
8994 3' -61.5 NC_002512.2 + 53851 0.66 0.79104
Target:  5'- -cGGCGCCGGGAGgagagggggaccgUCCGu-UCCCCa- -3'
miRNA:   3'- cuCCGUGGCCCUU-------------GGGCuuGGGGGcu -5'
8994 3' -61.5 NC_002512.2 + 112775 0.66 0.79104
Target:  5'- cGGGGCcccgugccgcuguGCCGGGuccagggcGGCCCGcACCUCCa- -3'
miRNA:   3'- -CUCCG-------------UGGCCC--------UUGGGCuUGGGGGcu -5'
8994 3' -61.5 NC_002512.2 + 225587 0.66 0.788487
Target:  5'- aGGGGCGCCGGGucuucgaccagcuGGCcgucgucguccgguCCGAcgaccuguauCCCCCGAa -3'
miRNA:   3'- -CUCCGUGGCCC-------------UUG--------------GGCUu---------GGGGGCU- -5'
8994 3' -61.5 NC_002512.2 + 206966 0.66 0.786778
Target:  5'- cGAGGuCAgcaggaagaagccgcCCGGGAuGCCCGuGGCCCgCGGg -3'
miRNA:   3'- -CUCC-GU---------------GGCCCU-UGGGC-UUGGGgGCU- -5'
8994 3' -61.5 NC_002512.2 + 86129 0.66 0.783346
Target:  5'- gGAGGUcgcggACCuGGAAgCCGAcgccgcggccGCCUCCGAg -3'
miRNA:   3'- -CUCCG-----UGGcCCUUgGGCU----------UGGGGGCU- -5'
8994 3' -61.5 NC_002512.2 + 126246 0.66 0.783346
Target:  5'- cGAGGaggGCCGGGugUCCGAagccgACCUCCa- -3'
miRNA:   3'- -CUCCg--UGGCCCuuGGGCU-----UGGGGGcu -5'
8994 3' -61.5 NC_002512.2 + 69954 0.66 0.783346
Target:  5'- -cGGcCACCGGGGACguaUCGcacaaGGCCCCCa- -3'
miRNA:   3'- cuCC-GUGGCCCUUG---GGC-----UUGGGGGcu -5'
8994 3' -61.5 NC_002512.2 + 43908 0.66 0.783346
Target:  5'- -cGGCGCaGGGAcaGgCCGuuGCCCUCGAg -3'
miRNA:   3'- cuCCGUGgCCCU--UgGGCu-UGGGGGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.