miRNA display CGI


Results 41 - 60 of 196 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8994 5' -57.9 NC_002512.2 + 41530 0.67 0.845514
Target:  5'- --gUGGUUgAAGGCCUGguaGAGGuuGCg -3'
miRNA:   3'- aagGCCGAgUUCCGGAUg--UUCCggCG- -5'
8994 5' -57.9 NC_002512.2 + 62726 0.67 0.845514
Target:  5'- gUCgCGG-UCGAcGGCCUcGCGGGGCaCGCc -3'
miRNA:   3'- aAG-GCCgAGUU-CCGGA-UGUUCCG-GCG- -5'
8994 5' -57.9 NC_002512.2 + 36113 0.67 0.846296
Target:  5'- -aCCGGCUguaaaacagaggacgGAGGCgacgaccGCGAGGCCGCg -3'
miRNA:   3'- aaGGCCGAg--------------UUCCGga-----UGUUCCGGCG- -5'
8994 5' -57.9 NC_002512.2 + 3373 0.67 0.853253
Target:  5'- --aCGGCggCAGGGCCgccaGCAGGacCCGCg -3'
miRNA:   3'- aagGCCGa-GUUCCGGa---UGUUCc-GGCG- -5'
8994 5' -57.9 NC_002512.2 + 10443 0.67 0.853253
Target:  5'- gUCgGGCaCGGGGgCgcggAgGAGGCCGCc -3'
miRNA:   3'- aAGgCCGaGUUCCgGa---UgUUCCGGCG- -5'
8994 5' -57.9 NC_002512.2 + 126301 0.67 0.853253
Target:  5'- -aCCGccCUCGuGGCCUGCGAGGCguCGUc -3'
miRNA:   3'- aaGGCc-GAGUuCCGGAUGUUCCG--GCG- -5'
8994 5' -57.9 NC_002512.2 + 139420 0.67 0.860055
Target:  5'- -cCCGGUgaUCGGGGaCCcGCAGcuggcccGGCCGCc -3'
miRNA:   3'- aaGGCCG--AGUUCC-GGaUGUU-------CCGGCG- -5'
8994 5' -57.9 NC_002512.2 + 31733 0.67 0.860801
Target:  5'- -gCCGGCgcCGAcccGGCCcgcGCGGGGCuCGCg -3'
miRNA:   3'- aaGGCCGa-GUU---CCGGa--UGUUCCG-GCG- -5'
8994 5' -57.9 NC_002512.2 + 65681 0.67 0.860801
Target:  5'- -cCCGGCggcccCGAGGcCCUGCAugaagucgucgAGGCCcCg -3'
miRNA:   3'- aaGGCCGa----GUUCC-GGAUGU-----------UCCGGcG- -5'
8994 5' -57.9 NC_002512.2 + 62571 0.67 0.845514
Target:  5'- uUUUCGaaCUCGAGGCgcACGGGGUCGCg -3'
miRNA:   3'- -AAGGCc-GAGUUCCGgaUGUUCCGGCG- -5'
8994 5' -57.9 NC_002512.2 + 42986 0.67 0.845514
Target:  5'- -gCUGGUUCccgacgAGGGCCaGC-AGGCUGCg -3'
miRNA:   3'- aaGGCCGAG------UUCCGGaUGuUCCGGCG- -5'
8994 5' -57.9 NC_002512.2 + 122880 0.67 0.83759
Target:  5'- -cCCGGCUCucGGCCgACcccGGCCcggGCg -3'
miRNA:   3'- aaGGCCGAGuuCCGGaUGuu-CCGG---CG- -5'
8994 5' -57.9 NC_002512.2 + 127457 0.67 0.821216
Target:  5'- gUCCaGCUgGAGGUCggGCAGaagcgguucguGGCCGCc -3'
miRNA:   3'- aAGGcCGAgUUCCGGa-UGUU-----------CCGGCG- -5'
8994 5' -57.9 NC_002512.2 + 116950 0.67 0.821216
Target:  5'- gUCCgcgGGCUCGcGcGCC-ACcGGGCCGCc -3'
miRNA:   3'- aAGG---CCGAGUuC-CGGaUGuUCCGGCG- -5'
8994 5' -57.9 NC_002512.2 + 226381 0.67 0.829489
Target:  5'- -gUCGGCgcguGGGCCUGCGAcgcaggagucGGCgGCg -3'
miRNA:   3'- aaGGCCGagu-UCCGGAUGUU----------CCGgCG- -5'
8994 5' -57.9 NC_002512.2 + 119387 0.67 0.829489
Target:  5'- --gCGGC----GGCCcugcUGCAGGGCCGCg -3'
miRNA:   3'- aagGCCGaguuCCGG----AUGUUCCGGCG- -5'
8994 5' -57.9 NC_002512.2 + 74264 0.67 0.83759
Target:  5'- -gCCGGCUCu---CCUcgcACAGGcGCCGCa -3'
miRNA:   3'- aaGGCCGAGuuccGGA---UGUUC-CGGCG- -5'
8994 5' -57.9 NC_002512.2 + 8100 0.67 0.83759
Target:  5'- -gCCGGCguagagCAGGcGCCaggacACGAcGGCCGCc -3'
miRNA:   3'- aaGGCCGa-----GUUC-CGGa----UGUU-CCGGCG- -5'
8994 5' -57.9 NC_002512.2 + 34976 0.67 0.83759
Target:  5'- gUCCGGCU--GGGCCUcGCGuc-CCGCg -3'
miRNA:   3'- aAGGCCGAguUCCGGA-UGUuccGGCG- -5'
8994 5' -57.9 NC_002512.2 + 130494 0.67 0.829489
Target:  5'- aUCCGucgCAGccGGgCUGCGAGGCCGUg -3'
miRNA:   3'- aAGGCcgaGUU--CCgGAUGUUCCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.